RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ENKURQ8TC29 256 aa6.91□□□□□ -1.3
VPS35-206ENST00000565228 RNASEH2CQ8TDP1 164 aaKnown RBP6.91□□□□□ -1.3
VPS35-206ENST00000565228 TXN2Q99757 166 aa6.91□□□□□ -1.3
VPS35-206ENST00000565228 C20orf24Q9BUV8 137 aa6.91□□□□□ -1.3
VPS35-206ENST00000565228 ELOVL1Q9BW60 279 aa6.91□□□□□ -1.3
VPS35-206ENST00000565228 PUS1Q9Y606 427 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS35-206ENST00000565228 U3KQ87 197 aa6.91□□□□□ -1.3
VPS35-206ENST00000565228 AGRNO00468 2067 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 IGHV3-66A0A0C4DH42 116 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 C7orf66A4D0T2 115 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 K7EPK0 472 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 CHEK1O14757 476 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 GNG7O60262 68 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 SUB1P53999 127 aaKnown RBP eCLIP6.9□□□□□ -1.3
VPS35-206ENST00000565228 H2BFSP57053 126 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 ZNF90Q03938 601 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 USF2Q15853 346 aaPredicted RBP6.9□□□□□ -1.3
VPS35-206ENST00000565228 FAM106AQ4KMX7 169 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 SPANXN5Q5MJ07 72 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 ST8SIA2Q92186 375 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 SMIM8Q96KF7 97 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 CITED4Q96RK1 184 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 RNF2Q99496 336 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 GPR61Q9BZJ8 451 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 HIPK2Q9H2X6 1198 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 GSKIPQ9P0R6 139 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 PEMTQ9UBM1 199 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 SMPXQ9UHP9 88 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 U3KQE9 123 aa6.9□□□□□ -1.3
VPS35-206ENST00000565228 RYR2Q92736 4967 aa6.89□□□□□ -1.31
VPS35-206ENST00000565228 IGHV7-4-1A0A0J9YVY3 117 aa6.89□□□□□ -1.31
VPS35-206ENST00000565228 K7EMT4 169 aa6.89□□□□□ -1.31
VPS35-206ENST00000565228 CORTO00230 105 aa6.89□□□□□ -1.31
VPS35-206ENST00000565228 NUPL2O15504 423 aaKnown RBP6.89□□□□□ -1.31
VPS35-206ENST00000565228 LY86O95711 162 aa6.89□□□□□ -1.31
VPS35-206ENST00000565228 SCGB1D2O95969 90 aa6.89□□□□□ -1.31
VPS35-206ENST00000565228 GATA2P23769 480 aaPredicted RBP6.89□□□□□ -1.31
VPS35-206ENST00000565228 ELLP55199 621 aaPredicted RBP6.89□□□□□ -1.31
VPS35-206ENST00000565228 RAB32Q13637 225 aa6.89□□□□□ -1.31
VPS35-206ENST00000565228 DEFB121Q5J5C9 76 aa6.89□□□□□ -1.31
VPS35-206ENST00000565228 ZNF600Q6ZNG1 722 aa6.89□□□□□ -1.31
VPS35-206ENST00000565228 FAM24BQ8N5W8 94 aa6.89□□□□□ -1.31
VPS35-206ENST00000565228 ACY3Q96HD9 319 aa6.89□□□□□ -1.31
VPS35-206ENST00000565228 C2orf50Q96LR7 162 aa6.89□□□□□ -1.31
VPS35-206ENST00000565228 C17orf77Q96MU5 243 aa6.89□□□□□ -1.31
VPS35-206ENST00000565228 ASCL2Q99929 193 aa6.89□□□□□ -1.31
VPS35-206ENST00000565228 VSIRQ9H7M9 311 aa6.89□□□□□ -1.31
VPS35-206ENST00000565228 PSENENQ9NZ42 101 aa6.89□□□□□ -1.31
VPS35-206ENST00000565228 MRPL27Q9P0M9 148 aaKnown RBP6.89□□□□□ -1.31
VPS35-206ENST00000565228 IGSF23A1L1A6 192 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 FAM24AA6NFZ4 105 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 SNRPGP15A8MWD9 76 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 FAM25EA8MYX2 175 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 CYB5BO43169 146 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 IFNA21P01568 189 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 IFNA4P05014 189 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 METTL15P1P0C7V9 234 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 IGHV4-30-4P0DP06 118 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 CXCL3P19876 107 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 OR10J1P30954 320 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 NPBWR1P48145 328 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 ZNF124Q15973 351 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 TATDN3Q17R31 274 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 LINC00322Q6ZN03 302 aaPredicted RBP6.88□□□□□ -1.31
VPS35-206ENST00000565228 DEFB125Q8N687 156 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 THAP8Q8NA92 274 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 RHPN1-AS1Q9BWJ2 59 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 DAZ1Q9NQZ3 744 aaKnown RBP6.88□□□□□ -1.31
VPS35-206ENST00000565228 PAIP2BQ9ULR5 123 aaKnown RBP6.88□□□□□ -1.31
VPS35-206ENST00000565228 UFC1Q9Y3C8 167 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 LSM5Q9Y4Y9 91 aaKnown RBP6.88□□□□□ -1.31
VPS35-206ENST00000565228 ALG5Q9Y673 324 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 SACSQ9NZJ4 4579 aa6.88□□□□□ -1.31
VPS35-206ENST00000565228 DYNC2H1Q8NCM8 4307 aaKnown RBP6.87□□□□□ -1.31
VPS35-206ENST00000565228 RBMY1BA6NDE4 496 aaKnown RBP6.87□□□□□ -1.31
VPS35-206ENST00000565228 C5orf51A6NDU8 294 aa6.87□□□□□ -1.31
VPS35-206ENST00000565228 RBMY1EA6NEQ0 496 aaKnown RBP6.87□□□□□ -1.31
VPS35-206ENST00000565228 GOSR2O14653 212 aa6.87□□□□□ -1.31
VPS35-206ENST00000565228 MED6O75586 246 aa6.87□□□□□ -1.31
VPS35-206ENST00000565228 YIF1AO95070 293 aa6.87□□□□□ -1.31
VPS35-206ENST00000565228 TOMM40O96008 361 aa6.87□□□□□ -1.31
VPS35-206ENST00000565228 RBMY1DP0C7P1 496 aaKnown RBP6.87□□□□□ -1.31
VPS35-206ENST00000565228 FRMD6-AS1P0C7T7 363 aa6.87□□□□□ -1.31
VPS35-206ENST00000565228 PSG1P11464 419 aa6.87□□□□□ -1.31
VPS35-206ENST00000565228 SLC25A4P12235 298 aa6.87□□□□□ -1.31
VPS35-206ENST00000565228 CRYBB3P26998 211 aa6.87□□□□□ -1.31
VPS35-206ENST00000565228 GPX4P36969 197 aaPredicted RBP6.87□□□□□ -1.31
VPS35-206ENST00000565228 YPEL3P61236 119 aaPredicted RBP6.87□□□□□ -1.31
VPS35-206ENST00000565228 RELQ04864 619 aaPredicted RBP6.87□□□□□ -1.31
VPS35-206ENST00000565228 OR2F1Q13607 317 aa6.87□□□□□ -1.31
VPS35-206ENST00000565228 ODF3L2Q3SX64 289 aa6.87□□□□□ -1.31
VPS35-206ENST00000565228 ACOT7LQ6ZUV0 252 aa6.87□□□□□ -1.31
VPS35-206ENST00000565228 SBSPONQ8IVN8 264 aa6.87□□□□□ -1.31
VPS35-206ENST00000565228 OR1S2Q8NGQ3 325 aa6.87□□□□□ -1.31
VPS35-206ENST00000565228 DYNLRB2Q8TF09 96 aa6.87□□□□□ -1.31
VPS35-206ENST00000565228 RNF126Q9BV68 326 aa6.87□□□□□ -1.31
VPS35-206ENST00000565228 TECRQ9NZ01 308 aaKnown RBP6.87□□□□□ -1.31
VPS35-206ENST00000565228 OR5AC2Q9NZP5 309 aa6.87□□□□□ -1.31
VPS35-206ENST00000565228 TRAV14DV4A0A0A6YYC5 116 aa6.86□□□□□ -1.31
VPS35-206ENST00000565228 RPS10-NUDT3A0A1W2PQS6 291 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms