RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 PIAS1O75925 651 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 OR5F1O95221 314 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 C1QBP02746 253 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 PRB1P04280 392 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 METTL15P1P0C7V9 234 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 S100A4P26447 101 aaKnown RBP0.59□□□□□ -2.31
USP3-209ENST00000558925 AKR1C3P42330 323 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 MAGEA12P43365 314 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 PIGPP57054 158 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 HSPE1P61604 102 aaKnown RBP0.59□□□□□ -2.31
USP3-209ENST00000558925 ARF6P62330 175 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 RHOBP62745 196 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 GNG5P63218 68 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 ELOBQ15370 118 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 NDUFA5Q16718 116 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 RNASE10Q5GAN6 216 aaKnown RBP0.59□□□□□ -2.31
USP3-209ENST00000558925 OR4E2Q8NGC2 313 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 ZNF563Q8TA94 476 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 GNPDA2Q8TDQ7 276 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 AP3S1Q92572 193 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 C2orf50Q96LR7 162 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 HOPXQ9BPY8 73 aaPredicted RBP0.59□□□□□ -2.31
USP3-209ENST00000558925 SLC50A1Q9BRV3 221 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 YIPF3Q9GZM5 350 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 PARVBQ9HBI1 364 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 GID8Q9NWU2 228 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 TVP23BQ9NYZ1 205 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 CKLFQ9UBR5 152 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 STRCQ7RTU9 1775 aa0.59□□□□□ -2.32
USP3-209ENST00000558925 HEATR1Q9H583 2144 aaKnown RBP0.59□□□□□ -2.32
USP3-209ENST00000558925 KIF1BO60333 1816 aa0.59□□□□□ -2.32
USP3-209ENST00000558925 DISP1Q96F81 1524 aa0.59□□□□□ -2.32
USP3-209ENST00000558925 MUC6Q6W4X9 2439 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 CEP192Q8TEP8 1941 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 NCOA1Q15788 1441 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 SMARCA4P51532 1647 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 A0A087X0T9 212 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 A0A0D9SG52 128 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 CYB5BO43169 146 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 CST8O60676 142 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 OR2B3O76000 313 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 RPSAP08865 295 aaKnown RBP0.58□□□□□ -2.32
USP3-209ENST00000558925 OR4E1P0C645 316 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 MGST1P10620 155 aaKnown RBP0.58□□□□□ -2.32
USP3-209ENST00000558925 RNASE4P34096 147 aaKnown RBP0.58□□□□□ -2.32
USP3-209ENST00000558925 TAS2R41P59536 307 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 NCALDP61601 193 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 KRR1Q13601 381 aaKnown RBP0.58□□□□□ -2.32
USP3-209ENST00000558925 CDK5R1Q15078 307 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 RHEBQ15382 184 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 DEFB113Q30KQ7 82 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 ZNF826PQ6ZT77 177 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 LYG2Q86SG7 212 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 TRAPPC6BQ86SZ2 158 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 Q8N2B8 174 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 SMIM20Q8N5G0 67 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 C3orf56Q8N813 242 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 OR13D1Q8NGV5 346 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 OR10J5Q8NHC4 309 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 MBD3L1Q8WWY6 194 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 GPR146Q96CH1 333 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 HIST1H2BLQ99880 126 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 PAIP2Q9BPZ3 127 aaKnown RBP0.58□□□□□ -2.32
USP3-209ENST00000558925 REG4Q9BYZ8 158 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 TMEM133Q9H2Q1 129 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 STOML2Q9UJZ1 356 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 PRNDQ9UKY0 176 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 MYO5AQ9Y4I1 1855 aaKnown RBP0.58□□□□□ -2.32
USP3-209ENST00000558925 POLEQ07864 2286 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 DENND4CQ5VZ89 1909 aa0.58□□□□□ -2.32
USP3-209ENST00000558925 LAMB2P55268 1798 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 CAMSAP1Q5T5Y3 1602 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 MIA2Q96PC5 1412 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 COL4A1P02462 1669 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 OTOGLQ3ZCN5 2332 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 TRBV19A0A075B6N1 114 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 TRAV14DV4A0A0A6YYC5 116 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 C2orf70A6NJV1 201 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 J3QRK9 145 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 M0R378 163 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 TAX1BP3O14907 124 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 SULT1B1O43704 296 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 OR2T1O43869 369 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 MFSD11O43934 449 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 S100A5P33763 92 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 SSR2P43308 183 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 YPEL3P61236 119 aaPredicted RBP0.57□□□□□ -2.32
USP3-209ENST00000558925 DYNLT1P63172 113 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 EIF5AP63241 154 aaKnown RBP0.57□□□□□ -2.32
USP3-209ENST00000558925 RPL19P84098 196 aaKnown RBP0.57□□□□□ -2.32
USP3-209ENST00000558925 SURF2Q15527 256 aaPredicted RBP0.57□□□□□ -2.32
USP3-209ENST00000558925 SNCBQ16143 134 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 RRN3P1Q2M238 152 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 SOSTDC1Q6X4U4 206 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 PDZD9Q8IXQ8 264 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 Q8IYB0 196 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 C10orf126Q8N4M7 172 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 LINC00471Q8N535 108 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 LINC00311Q8N616 119 aa0.57□□□□□ -2.32
USP3-209ENST00000558925 ZNF418Q8TF45 676 aaPredicted RBP0.57□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms