RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 GPR6P46095 362 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-215ENST00000552823 ZNF137PP52743 207 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 PRRX1P54821 245 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 PNRC1Q12796 327 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-215ENST00000552823 TMEM155Q4W5P6 130 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 Q71RC1 249 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-215ENST00000552823 MAPK1IP1LQ8NDC0 245 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 TIMD4Q96H15 378 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 PAXXQ9BUH6 204 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 WNT10AQ9GZT5 417 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 DNAJC4Q9NNZ3 241 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 TECRQ9NZ01 308 aaKnown RBP4.5□□□□□ -1.69
LIMA1-215ENST00000552823 SLC45A2Q9UMX9 530 aa4.5□□□□□ -1.69
LIMA1-215ENST00000552823 IGHV1-3A0A0C4DH29 117 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 C19orf84I3L1E1 186 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 DLL1O00548 723 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 PFN1P07737 140 aaKnown RBP4.49□□□□□ -1.69
LIMA1-215ENST00000552823 ECSCRQ19T08 205 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 TIGITQ495A1 244 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 KCNIP4Q6PIL6 250 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 TMEM144Q7Z5S9 345 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 BCL6BQ8N143 479 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-215ENST00000552823 OSR1Q8TAX0 266 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-215ENST00000552823 RAB1CQ92928 201 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 TMEM186Q96B77 213 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 SFRP2Q96HF1 295 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 PACRGQ96M98 296 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-215ENST00000552823 SMDT1Q9H4I9 107 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 FN1P02751 2386 aaKnown RBP4.49□□□□□ -1.69
LIMA1-215ENST00000552823 CGB1A6NKQ9 187 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 GGTLC3B5MD39 225 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 F2Z2F3 143 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 TMEM250H0YL14 139 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 K7EN84 100 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 NDUFA2O43678 99 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 NUPR1O60356 82 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 C8orf88P0DMB2 117 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 HOXA5P20719 270 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 NTF3P20783 257 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 USF1P22415 310 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-215ENST00000552823 SUB1P53999 127 aaKnown RBP eCLIP4.49□□□□□ -1.69
LIMA1-215ENST00000552823 MFAP2P55001 183 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 MEF2CQ06413 473 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-215ENST00000552823 ZNF833PQ6ZTB9 187 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 BAGE3Q86Y29 109 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 BAGE2Q86Y30 109 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 C11orf42Q8N5U0 333 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 OR5AN1Q8NGI8 311 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 SRSF12Q8WXF0 261 aaKnown RBP4.49□□□□□ -1.69
LIMA1-215ENST00000552823 FAM168AQ92567 244 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 GNB4Q9HAV0 340 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 GSN-AS1Q9NRJ2 163 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 NDUFA4L2Q9NRX3 87 aa4.49□□□□□ -1.69
LIMA1-215ENST00000552823 SOX21Q9Y651 276 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-215ENST00000552823 LOC105371242A0A075B767 164 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 SNURFLB1AK76 121 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 PRSS46E5RG02 174 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 CORTO00230 105 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 UBE2CO00762 179 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 OR2J3O76001 311 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 GZMBP10144 247 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 CDX1P47902 265 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-215ENST00000552823 LY6EQ16553 131 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 PPP1R27Q86WC6 154 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 TMEM219Q86XT9 240 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 EXOC3-AS1Q8N2X6 119 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 OR1L6Q8NGR2 347 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 OR5B3Q8NH48 314 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 ZNF503Q96F45 646 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 DIRC2Q96SL1 478 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 SSBP4Q9BWG4 385 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-215ENST00000552823 FKBP11Q9NYL4 201 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 NAT8BQ9UHF3 227 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 LSM4Q9Y4Z0 139 aaKnown RBP4.48□□□□□ -1.69
LIMA1-215ENST00000552823 BUB1B-PAK6H3BSN5 160 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 IGHV2-5P01817 119 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 PMCHP20382 165 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 HTR1DP28221 377 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 FCGR2BP31994 310 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-215ENST00000552823 RPL29P47914 159 aaKnown RBP4.48□□□□□ -1.69
LIMA1-215ENST00000552823 CR1LQ2VPA4 569 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 Q56UQ5 140 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 PATE2Q6UY27 113 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 BRD3OSQ6XYD6 125 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-215ENST00000552823 OR52E5Q8NH55 327 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 C17orf77Q96MU5 243 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 BET1LQ9NYM9 111 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 A0A087WWC5 75 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 H0Y8G0 127 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 J3KRW8 73 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 PDE6DO43924 150 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 MPDU1O75352 247 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 LIPFP07098 398 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 FOLR2P14207 255 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 ZFP36P26651 326 aaKnown RBP4.48□□□□□ -1.69
LIMA1-215ENST00000552823 TAS2R45P59539 299 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 UBE2G1P62253 170 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 USF2Q15853 346 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-215ENST00000552823 TEX38Q6PEX7 206 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms