RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 GGACTQ9BVM4 153 aa10.51□□□□□ -0.73
PTCH1-213ENST00000546820 LYRM2Q9NU23 88 aaPredicted RBP10.51□□□□□ -0.73
PTCH1-213ENST00000546820 MRPL36Q9P0J6 103 aaKnown RBP10.51□□□□□ -0.73
PTCH1-213ENST00000546820 PKD1L1Q8TDX9 2849 aa10.51□□□□□ -0.73
PTCH1-213ENST00000546820 FAM24AA6NFZ4 105 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 FNDC10F2Z333 226 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 G3V4G9 280 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 K7EMT4 169 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 MPC2O95563 127 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 CSN3P07498 182 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 IGLC1P0CG04 106 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 P2RY1P47900 373 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 HBG1P69891 147 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 HBG2P69892 147 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 DLK1P80370 383 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 TIGITQ495A1 244 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 SAMD5Q5TGI4 173 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 STX12Q86Y82 276 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 TMEM190Q8WZ59 177 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 GINS3Q9BRX5 216 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 C11orf1Q9H5F2 150 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 NPVFQ9HCQ7 196 aa10.5□□□□□ -0.73
PTCH1-213ENST00000546820 MRPL27Q9P0M9 148 aaKnown RBP10.5□□□□□ -0.73
PTCH1-213ENST00000546820 TRRAPQ9Y4A5 3859 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 SMCO3A2RU48 225 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 C2orf70A6NJV1 201 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 PMS2P5A8MQ11 134 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 A8MWP6 167 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 PRSS46E5RG02 174 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 WIPF1O43516 503 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 IGKV1-17P01599 117 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 GIPP09681 153 aaPredicted RBP10.49□□□□□ -0.73
PTCH1-213ENST00000546820 RD3LP0DJH9 198 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 CBLN1P23435 193 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 S100A11P31949 105 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 SULT1A1P50225 295 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 AKR1C1Q04828 323 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 TOMM20LQ6UXN7 152 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 UNQ9165/PRO28630Q6UXU0 137 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 IL34Q6ZMJ4 242 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 ACOT7LQ6ZUV0 252 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 TMEM252Q8N6L7 170 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 OR11H7Q8NGC8 314 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 THAP6Q8TBB0 222 aa10.49□□□□□ -0.73
PTCH1-213ENST00000546820 DAZ1Q9NQZ3 744 aaKnown RBP10.49□□□□□ -0.73
PTCH1-213ENST00000546820 PUS1Q9Y606 427 aaKnown RBP eCLIP10.49□□□□□ -0.73
PTCH1-213ENST00000546820 TRAV14DV4A0A0A6YYC5 116 aa10.48□□□□□ -0.73
PTCH1-213ENST00000546820 CST7O76096 145 aa10.48□□□□□ -0.73
PTCH1-213ENST00000546820 FOLR2P14207 255 aa10.48□□□□□ -0.73
PTCH1-213ENST00000546820 BMI1P35226 326 aa10.48□□□□□ -0.73
PTCH1-213ENST00000546820 RAP2BP61225 183 aa10.48□□□□□ -0.73
PTCH1-213ENST00000546820 ATP6V1FQ16864 119 aa10.48□□□□□ -0.73
PTCH1-213ENST00000546820 TM4SF20Q53R12 229 aa10.48□□□□□ -0.73
PTCH1-213ENST00000546820 TMEM144Q7Z5S9 345 aa10.48□□□□□ -0.73
PTCH1-213ENST00000546820 DYNLRB2Q8TF09 96 aa10.48□□□□□ -0.73
PTCH1-213ENST00000546820 WDR89Q96FK6 387 aaPredicted RBP10.48□□□□□ -0.73
PTCH1-213ENST00000546820 TRGV9Q99603 122 aa10.48□□□□□ -0.73
PTCH1-213ENST00000546820 RNF126Q9BV68 326 aa10.48□□□□□ -0.73
PTCH1-213ENST00000546820 TECRQ9NZ01 308 aaKnown RBP10.48□□□□□ -0.73
PTCH1-213ENST00000546820 OR5AC2Q9NZP5 309 aa10.48□□□□□ -0.73
PTCH1-213ENST00000546820 NOTCH3Q9UM47 2321 aa10.47□□□□□ -0.73
PTCH1-213ENST00000546820 TMEM213A2RRL7 107 aa10.47□□□□□ -0.73
PTCH1-213ENST00000546820 H0YIZ8 118 aa10.47□□□□□ -0.73
PTCH1-213ENST00000546820 TOMM40O96008 361 aa10.47□□□□□ -0.73
PTCH1-213ENST00000546820 CFDP00746 253 aaPredicted RBP10.47□□□□□ -0.73
PTCH1-213ENST00000546820 NPPCP23582 126 aa10.47□□□□□ -0.73
PTCH1-213ENST00000546820 SLC38A11Q08AI6 406 aa10.47□□□□□ -0.73
PTCH1-213ENST00000546820 RAB31Q13636 194 aa10.47□□□□□ -0.73
PTCH1-213ENST00000546820 LILRB2Q8N423 598 aa10.47□□□□□ -0.73
PTCH1-213ENST00000546820 TMEM217Q8N7C4 229 aa10.47□□□□□ -0.73
PTCH1-213ENST00000546820 THAP8Q8NA92 274 aa10.47□□□□□ -0.73
PTCH1-213ENST00000546820 OR2K2Q8NGT1 345 aa10.47□□□□□ -0.73
PTCH1-213ENST00000546820 NARS2Q96I59 477 aaKnown RBP10.47□□□□□ -0.73
PTCH1-213ENST00000546820 PFDN2Q9UHV9 154 aa10.47□□□□□ -0.73
PTCH1-213ENST00000546820 MGAM2Q2M2H8 2515 aa10.46□□□□□ -0.73
PTCH1-213ENST00000546820 CCNKO75909 580 aa10.46□□□□□ -0.73
PTCH1-213ENST00000546820 IGLV1-51P01701 117 aa10.46□□□□□ -0.73
PTCH1-213ENST00000546820 C8orf88P0DMB2 117 aa10.46□□□□□ -0.73
PTCH1-213ENST00000546820 PSG1P11464 419 aa10.46□□□□□ -0.73
PTCH1-213ENST00000546820 NUP62P37198 522 aaPredicted RBP10.46□□□□□ -0.73
PTCH1-213ENST00000546820 BAXQ07812 192 aa10.46□□□□□ -0.73
PTCH1-213ENST00000546820 ARL16Q0P5N6 197 aa10.46□□□□□ -0.73
PTCH1-213ENST00000546820 KPRPQ5T749 579 aaPredicted RBP10.46□□□□□ -0.73
PTCH1-213ENST00000546820 TEPPQ6URK8 271 aa10.46□□□□□ -0.73
PTCH1-213ENST00000546820 OR51G1Q8NGK1 321 aa10.46□□□□□ -0.73
PTCH1-213ENST00000546820 METTL26Q96S19 204 aa10.46□□□□□ -0.73
PTCH1-213ENST00000546820 IGHV3OR16-8A0A075B7F1 116 aa10.45□□□□□ -0.74
PTCH1-213ENST00000546820 IGHV7-4-1A0A0J9YVY3 117 aa10.45□□□□□ -0.74
PTCH1-213ENST00000546820 A0A1W2PS18 150 aa10.45□□□□□ -0.74
PTCH1-213ENST00000546820 IGSF23A1L1A6 192 aa10.45□□□□□ -0.74
PTCH1-213ENST00000546820 ZNF207O43670 478 aaKnown RBP10.45□□□□□ -0.74
PTCH1-213ENST00000546820 IL4P05112 153 aa10.45□□□□□ -0.74
PTCH1-213ENST00000546820 LYL1P12980 280 aa10.45□□□□□ -0.74
PTCH1-213ENST00000546820 SELENOTP62341 195 aa10.45□□□□□ -0.74
PTCH1-213ENST00000546820 NHLH2Q02577 135 aa10.45□□□□□ -0.74
PTCH1-213ENST00000546820 EGFEM1PQ0D2K5 195 aa10.45□□□□□ -0.74
PTCH1-213ENST00000546820 DEFB114Q30KQ6 69 aa10.45□□□□□ -0.74
PTCH1-213ENST00000546820 BEAN1Q3B7T3 259 aa10.45□□□□□ -0.74
PTCH1-213ENST00000546820 LAMTOR1Q6IAA8 161 aa10.45□□□□□ -0.74
PTCH1-213ENST00000546820 LCN12Q6JVE5 192 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms