RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	WDR61	Q9GZS3	305 aa	Known RBP	7.42	□□□□□ -1.22
YBX3-215	ENST00000544504	ARV1	Q9H2C2	271 aa		7.42	□□□□□ -1.22
YBX3-215	ENST00000544504	FNDC4	Q9H6D8	234 aa	Predicted RBP	7.42	□□□□□ -1.22
YBX3-215	ENST00000544504	CYTL1	Q9NRR1	136 aa		7.42	□□□□□ -1.22
YBX3-215	ENST00000544504	SERTAD4	Q9NUC0	356 aa		7.42	□□□□□ -1.22
YBX3-215	ENST00000544504	C21orf62	Q9NYP8	219 aa		7.42	□□□□□ -1.22
YBX3-215	ENST00000544504	LINC00527	Q9UJ94	153 aa		7.42	□□□□□ -1.22
YBX3-215	ENST00000544504	TIMM9	Q9Y5J7	89 aa		7.42	□□□□□ -1.22
YBX3-215	ENST00000544504	WNK1	Q9H4A3	2382 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	ZFP92	A6NM28	416 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	GNG7	O60262	68 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	CLN5	O75503	358 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	NDUFB8	O95169	186 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	PRH1	P02810	166 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	SEC11B	P0C7V7	166 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	MDK	P21741	143 aa	Predicted RBP	7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	PSMB8	P28062	276 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	CAMLG	P49069	296 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	RAB9A	P51151	201 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	SERF2	P84101	59 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	TMEM95	Q3KNT9	176 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	SPSB3	Q6PJ21	355 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	KLHDC1	Q8N7A1	406 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	RNF152	Q8N8N0	203 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	ST8SIA2	Q92186	375 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	NPIPB3	Q92617	1050 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	MS4A10	Q96PG2	267 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	TRGV9	Q99603	122 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	WFDC1	Q9HC57	220 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	BOLA1	Q9Y3E2	137 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	LSM4	Q9Y4Z0	139 aa	Known RBP	7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	DMRT1	Q9Y5R6	373 aa		7.41	□□□□□ -1.22
YBX3-215	ENST00000544504	CLPSL1	A2RUU4	121 aa		7.4	□□□□□ -1.22
YBX3-215	ENST00000544504	UMAD1	C9J7I0	102 aa		7.4	□□□□□ -1.22
YBX3-215	ENST00000544504	MB	P02144	154 aa		7.4	□□□□□ -1.22
YBX3-215	ENST00000544504	OR10J1	P30954	320 aa		7.4	□□□□□ -1.22
YBX3-215	ENST00000544504	S100A7	P31151	101 aa		7.4	□□□□□ -1.22
YBX3-215	ENST00000544504	RAB5C	P51148	216 aa		7.4	□□□□□ -1.22
YBX3-215	ENST00000544504		Q56UQ5	140 aa		7.4	□□□□□ -1.22
YBX3-215	ENST00000544504	PXDC1	Q5TGL8	231 aa		7.4	□□□□□ -1.22
YBX3-215	ENST00000544504	C19orf35	Q6ZS72	473 aa		7.4	□□□□□ -1.22
YBX3-215	ENST00000544504	S100A7A	Q86SG5	101 aa		7.4	□□□□□ -1.22
YBX3-215	ENST00000544504	ZNF329	Q86UD4	541 aa		7.4	□□□□□ -1.22
YBX3-215	ENST00000544504	HSD17B11	Q8NBQ5	300 aa		7.4	□□□□□ -1.22
YBX3-215	ENST00000544504	LRRC20	Q8TCA0	184 aa		7.4	□□□□□ -1.22
YBX3-215	ENST00000544504	EPPK1	P58107	5090 aa	Known RBP	7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	TCRBV4S1A1T	A0A5B7	111 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504		M0QZ24	198 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	AGPAT2	O15120	278 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	NUPL2	O15504	423 aa	Known RBP	7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	SPP1	P10451	314 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	ATP6V0C	P27449	155 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	RPL29	P47914	159 aa	Known RBP	7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	YPEL3	P61236	119 aa	Predicted RBP	7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	MLANA	Q16655	118 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	TEX261	Q6UWH6	196 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504		Q6ZRG5	221 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	CYP2G1P	Q6ZSU1	146 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	ZNF767P	Q75MW2	155 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	BPIFC	Q8NFQ6	507 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	OR5AU1	Q8NGC0	362 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	OR2G3	Q8NGZ4	309 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	LINC01006	Q8NI28	216 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	ZNF502	Q8TBZ5	544 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	UBE2E2	Q96LR5	201 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	NPCDR1	Q9BY65	106 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	RNF114	Q9Y508	228 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	BIRC6	Q9NR09	4857 aa		7.39	□□□□□ -1.23
YBX3-215	ENST00000544504	IGHV3-21	A0A0B4J1V1	117 aa		7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	MFSD2B	A6NFX1	497 aa		7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	TSPAN15	O95858	294 aa		7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	IGLC1	P0CG04	106 aa		7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	REL	Q04864	619 aa	Predicted RBP	7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	ACOT6	Q3I5F7	207 aa	Predicted RBP	7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	AKR1C8P	Q5T2L2	129 aa		7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	ZNF343	Q6P1L6	599 aa		7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	DPPA3	Q6W0C5	159 aa		7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	ZNF680	Q8NEM1	530 aa		7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	MYOZ3	Q8TDC0	251 aa		7.38	□□□□□ -1.23
YBX3-215	ENST00000544504		Q8WTZ3	238 aa		7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	MGST2	Q99735	147 aa		7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	GGTLC1	Q9BX51	225 aa		7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	SLC25A32	Q9H2D1	315 aa		7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	UBQLN2	Q9UHD9	624 aa		7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	PFDN2	Q9UHV9	154 aa		7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	SLC45A2	Q9UMX9	530 aa		7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	RNF24	Q9Y225	148 aa		7.38	□□□□□ -1.23
YBX3-215	ENST00000544504	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	7.37	□□□□□ -1.23
YBX3-215	ENST00000544504	TGOLN2	O43493	480 aa		7.37	□□□□□ -1.23
YBX3-215	ENST00000544504	TOMM40	O96008	361 aa		7.37	□□□□□ -1.23
YBX3-215	ENST00000544504	IGHV3-48	P01763	117 aa		7.37	□□□□□ -1.23
YBX3-215	ENST00000544504	CLEC3B	P05452	202 aa		7.37	□□□□□ -1.23
YBX3-215	ENST00000544504	RD3L	P0DJH9	198 aa		7.37	□□□□□ -1.23
YBX3-215	ENST00000544504	GPR183	P32249	361 aa		7.37	□□□□□ -1.23
YBX3-215	ENST00000544504	CDX1	P47902	265 aa	Predicted RBP	7.37	□□□□□ -1.23
YBX3-215	ENST00000544504	RAB14	P61106	215 aa		7.37	□□□□□ -1.23
YBX3-215	ENST00000544504	RUNX1	Q01196	453 aa		7.37	□□□□□ -1.23
YBX3-215	ENST00000544504	ZNF616	Q08AN1	781 aa		7.37	□□□□□ -1.23
YBX3-215	ENST00000544504	CLEC19A	Q6UXS0	136 aa		7.37	□□□□□ -1.23
YBX3-215	ENST00000544504	ZNF600	Q6ZNG1	722 aa		7.37	□□□□□ -1.23

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