RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 OR10G9Q8NGN4 311 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 OR10G7Q8NGN6 311 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 ZNF418Q8TF45 676 aaPredicted RBP13.85□□□□□ -0.19
CLIP1-215ENST00000541108 NOL4LQ96MY1 436 aaPredicted RBP13.85□□□□□ -0.19
CLIP1-215ENST00000541108 C19orf24Q9BVV8 132 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 PFDN2Q9UHV9 154 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 FAM223BA6NKX1 122 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 NUDT19A8MXV4 375 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 YIF1AO95070 293 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 IGLV1-40P01703 118 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 RAB2AP61019 212 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 C15orf32Q32M92 178 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 FAM223AQ8IWN6 122 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 ATP6V0BQ99437 205 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 ZNF702PQ9H963 129 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 GAR1Q9NY12 217 aaKnown RBP13.85□□□□□ -0.19
CLIP1-215ENST00000541108 TRAV1-1A0A0B4J248 108 aa13.84□□□□□ -0.19
CLIP1-215ENST00000541108 FABP1P07148 127 aa13.84□□□□□ -0.19
CLIP1-215ENST00000541108 ZNF90Q03938 601 aa13.84□□□□□ -0.19
CLIP1-215ENST00000541108 SLC7A5P1Q8MH63 180 aa13.84□□□□□ -0.19
CLIP1-215ENST00000541108 MBD3L1Q8WWY6 194 aa13.84□□□□□ -0.19
CLIP1-215ENST00000541108 DUX5Q96PT3 197 aa13.84□□□□□ -0.19
CLIP1-215ENST00000541108 ACTR3CQ9C0K3 210 aaPredicted RBP13.84□□□□□ -0.19
CLIP1-215ENST00000541108 HRH4Q9H3N8 390 aa13.84□□□□□ -0.19
CLIP1-215ENST00000541108 TMEM89A2RUT3 159 aa13.83□□□□□ -0.2
CLIP1-215ENST00000541108 MFSD2BA6NFX1 497 aa13.83□□□□□ -0.2
CLIP1-215ENST00000541108 TEX46H3BTG2 121 aa13.83□□□□□ -0.2
CLIP1-215ENST00000541108 GNG7O60262 68 aa13.83□□□□□ -0.2
CLIP1-215ENST00000541108 SCGB2A1O75556 95 aa13.83□□□□□ -0.2
CLIP1-215ENST00000541108 RCC1LQ96I51 464 aaKnown RBP13.83□□□□□ -0.2
CLIP1-215ENST00000541108 USMG5Q96IX5 58 aa13.83□□□□□ -0.2
CLIP1-215ENST00000541108 TRBV7-1A0A0A6YYK4 115 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 SEC14L6B5MCN3 397 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 F8W735 103 aaPredicted RBP13.82□□□□□ -0.2
CLIP1-215ENST00000541108 HBE1P02100 147 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 ZNF502Q8TBZ5 544 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 SFT2D1Q8WV19 159 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 MS4A10Q96PG2 267 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 ESM1Q9NQ30 184 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 ANK3Q12955 4377 aaKnown RBP13.82□□□□□ -0.2
CLIP1-215ENST00000541108 CTXND1A0A1B0GTU2 59 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 IGKV1-17P01599 117 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 IGHG4P01861 327 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 TRGV3P03979 118 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 GATA2P23769 480 aaPredicted RBP13.82□□□□□ -0.2
CLIP1-215ENST00000541108 HILS1P60008 231 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 YPEL3P61236 119 aaPredicted RBP13.82□□□□□ -0.2
CLIP1-215ENST00000541108 ATP5G2Q06055 141 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 ZNF726P1Q15940 193 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 IL34Q6ZMJ4 242 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 COMMD1Q8N668 190 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 GATAD1Q8WUU5 269 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 EEF1AKMT3Q96AZ1 226 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 JMJD8Q96S16 334 aa13.82□□□□□ -0.2
CLIP1-215ENST00000541108 A0A1W2PPV4 95 aa13.81□□□□□ -0.2
CLIP1-215ENST00000541108 FAM181BA6NEQ2 426 aa13.81□□□□□ -0.2
CLIP1-215ENST00000541108 RNASE1P07998 156 aaKnown RBP13.81□□□□□ -0.2
CLIP1-215ENST00000541108 CDC34P49427 236 aaPredicted RBP13.81□□□□□ -0.2
CLIP1-215ENST00000541108 PLP1P60201 277 aa13.81□□□□□ -0.2
CLIP1-215ENST00000541108 SLC35B1P78383 322 aa13.81□□□□□ -0.2
CLIP1-215ENST00000541108 Q56UQ5 140 aa13.81□□□□□ -0.2
CLIP1-215ENST00000541108 GCSAMLQ5JQS6 135 aa13.81□□□□□ -0.2
CLIP1-215ENST00000541108 MARC2Q969Z3 335 aa13.81□□□□□ -0.2
CLIP1-215ENST00000541108 PFDN5Q99471 154 aa13.81□□□□□ -0.2
CLIP1-215ENST00000541108 ELOA3CA0A087WX78 387 aaPredicted RBP13.8□□□□□ -0.2
CLIP1-215ENST00000541108 A0A0G2JLM5 398 aa13.8□□□□□ -0.2
CLIP1-215ENST00000541108 RHOBP62745 196 aa13.8□□□□□ -0.2
CLIP1-215ENST00000541108 TMEM95Q3KNT9 176 aa13.8□□□□□ -0.2
CLIP1-215ENST00000541108 SPSB3Q6PJ21 355 aa13.8□□□□□ -0.2
CLIP1-215ENST00000541108 COMMD7Q86VX2 200 aa13.8□□□□□ -0.2
CLIP1-215ENST00000541108 EIF4E3Q8N5X7 224 aaKnown RBP13.8□□□□□ -0.2
CLIP1-215ENST00000541108 OR1L4Q8NGR5 311 aa13.8□□□□□ -0.2
CLIP1-215ENST00000541108 RAB24Q969Q5 203 aa13.8□□□□□ -0.2
CLIP1-215ENST00000541108 GSX1Q9H4S2 264 aaPredicted RBP13.8□□□□□ -0.2
CLIP1-215ENST00000541108 DNAJC4Q9NNZ3 241 aa13.8□□□□□ -0.2
CLIP1-215ENST00000541108 S4R3C0 116 aa13.8□□□□□ -0.2
CLIP1-215ENST00000541108 HIVEP1P15822 2718 aa13.8□□□□□ -0.2
CLIP1-215ENST00000541108 RAB19A4D1S5 217 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 PSMB11A5LHX3 300 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 TOMM40O96008 361 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 CTSGP08311 255 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 RD3LP0DJH9 198 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 PSG1P11464 419 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 PSMB8P28062 276 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 RAB9AP51151 201 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 TPPP2P59282 170 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 TIGITQ495A1 244 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 FAM122CQ6P4D5 195 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 RNF2Q99496 336 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 MAP1LC3B2A6NCE7 125 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 INAFM1C9JVW0 142 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 NUPL2O15504 423 aaKnown RBP13.79□□□□□ -0.2
CLIP1-215ENST00000541108 PF4V1P10720 104 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 TEX38Q6PEX7 206 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 OR51G1Q8NGK1 321 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 TMEM37Q8WXS4 190 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 MAP1LC3BQ9GZQ8 125 aa13.79□□□□□ -0.2
CLIP1-215ENST00000541108 SEPSECSQ9HD40 501 aaKnown RBP13.79□□□□□ -0.2
CLIP1-215ENST00000541108 MTORP42345 2549 aa13.78□□□□□ -0.2
CLIP1-215ENST00000541108 CLEC3BP05452 202 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms