RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	CDK5RAP2	Q96SN8	1893 aa		7.29	□□□□□ -1.24
YBX3-208	ENST00000540447	IGKV1D-8	A0A087WSZ0	117 aa		7.29	□□□□□ -1.24
YBX3-208	ENST00000540447	RRN3P1	Q2M238	152 aa		7.29	□□□□□ -1.24
YBX3-208	ENST00000540447	HAPLN4	Q86UW8	402 aa		7.29	□□□□□ -1.24
YBX3-208	ENST00000540447	TREML4	Q6UXN2	200 aa		7.29	□□□□□ -1.24
YBX3-208	ENST00000540447	FOXI2	Q6ZQN5	318 aa		7.29	□□□□□ -1.24
YBX3-208	ENST00000540447	IGHV5-51	A0A0C4DH38	117 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	ATOX1	O00244	68 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	LYZL1	Q6UWQ5	148 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	FAM214B	Q7L5A3	538 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	LAMTOR3	Q9UHA4	124 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	FAM106CP	P0CH98	169 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	CD28	P10747	220 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	PDLIM4	P50479	330 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	FAM106A	Q4KMX7	169 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	FOXI1	Q12951	378 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	VWC2	Q2TAL6	325 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	SHISA5	Q8N114	240 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	CARD19	Q96LW7	228 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	PRO1854	Q9UHT4	67 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	C9orf172	C9J069	976 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	SRSF7	Q16629	238 aa	Known RBP eCLIP	7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	ZNF826P	Q6ZT77	177 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	RCHY1	Q96PM5	261 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	SCN7A	Q01118	1682 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	PTPRF	P10586	1907 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447	IFNL4	K9M1U5	179 aa		7.28	□□□□□ -1.24
YBX3-208	ENST00000540447		J3QW42	95 aa		7.27	□□□□□ -1.24
YBX3-208	ENST00000540447	NPY	P01303	97 aa		7.27	□□□□□ -1.24
YBX3-208	ENST00000540447	SRSF2	Q01130	221 aa	Known RBP	7.27	□□□□□ -1.24
YBX3-208	ENST00000540447	DDB2	Q92466	427 aa		7.27	□□□□□ -1.25
YBX3-208	ENST00000540447	RASL10B	Q96S79	203 aa		7.27	□□□□□ -1.25
YBX3-208	ENST00000540447	TMEM74B	Q9NUR3	256 aa		7.27	□□□□□ -1.25
YBX3-208	ENST00000540447	CHD3	Q12873	2000 aa	Known RBP	7.27	□□□□□ -1.25
YBX3-208	ENST00000540447	LRP5	O75197	1615 aa		7.27	□□□□□ -1.25
YBX3-208	ENST00000540447	IGLL5	B9A064	214 aa		7.27	□□□□□ -1.25
YBX3-208	ENST00000540447	HLA-DMB	P28068	263 aa		7.27	□□□□□ -1.25
YBX3-208	ENST00000540447	LYPD6B	Q8NI32	183 aa		7.27	□□□□□ -1.25
YBX3-208	ENST00000540447	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	7.27	□□□□□ -1.25
YBX3-208	ENST00000540447	MAST2	Q6P0Q8	1798 aa		7.27	□□□□□ -1.25
YBX3-208	ENST00000540447	UBR2	Q8IWV8	1755 aa		7.27	□□□□□ -1.25
YBX3-208	ENST00000540447	KIAA0100	Q14667	2235 aa	Known RBP	7.27	□□□□□ -1.25
YBX3-208	ENST00000540447	SCN3A	Q9NY46	2000 aa		7.27	□□□□□ -1.25
YBX3-208	ENST00000540447	ECM29	Q5VYK3	1845 aa		7.27	□□□□□ -1.25
YBX3-208	ENST00000540447	C12orf77	C9JDV5	145 aa		7.27	□□□□□ -1.25
YBX3-208	ENST00000540447	NMS	Q5H8A3	153 aa		7.27	□□□□□ -1.25
YBX3-208	ENST00000540447	UBL5	Q9BZL1	73 aa		7.27	□□□□□ -1.25
YBX3-208	ENST00000540447	AGFG2	O95081	481 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	ACYP1	P07311	99 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	NEGR1	Q7Z3B1	354 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	CCL13	Q99616	98 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	PRR32	B1ATL7	298 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	DOCK9	Q9BZ29	2069 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	PRDM14	Q9GZV8	571 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	LY75	O60449	1722 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	ALS2	Q96Q42	1657 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	GBF1	Q92538	1859 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	TCRBV4S1A1T	A0A5B7	111 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	PRRG2	O14669	202 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	RS1	O15537	224 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	RPL15	P61313	204 aa	Known RBP	7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	TMEM14EP	Q6UXP3	125 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	TEN1	Q86WV5	123 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	PRR33	A8MZF0	331 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	SMKR1	H3BMG3	65 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	TCRA	P04437	139 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	ZC2HC1A	Q96GY0	325 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	GFRA4	Q9GZZ7	299 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	LIME1	Q9H400	295 aa		7.26	□□□□□ -1.25
YBX3-208	ENST00000540447	SLC25A16	P16260	332 aa		7.25	□□□□□ -1.25
YBX3-208	ENST00000540447	NPPC	P23582	126 aa		7.25	□□□□□ -1.25
YBX3-208	ENST00000540447	CXCL12	P48061	93 aa		7.25	□□□□□ -1.25
YBX3-208	ENST00000540447		A0A1B0GX51	115 aa		7.25	□□□□□ -1.25
YBX3-208	ENST00000540447	PEBP1	P30086	187 aa	Known RBP	7.25	□□□□□ -1.25
YBX3-208	ENST00000540447	GLMP	Q8WWB7	406 aa		7.25	□□□□□ -1.25
YBX3-208	ENST00000540447	TOGARAM1	Q9Y4F4	1720 aa		7.25	□□□□□ -1.25
YBX3-208	ENST00000540447		A0A0U1RQV1	116 aa		7.25	□□□□□ -1.25
YBX3-208	ENST00000540447	FOXA2	Q9Y261	457 aa	Predicted RBP	7.25	□□□□□ -1.25
YBX3-208	ENST00000540447	LPAL2	Q16609	132 aa		7.25	□□□□□ -1.25
YBX3-208	ENST00000540447	SPTY2D1-AS1	A0A0U1RR47	76 aa		7.25	□□□□□ -1.25
YBX3-208	ENST00000540447		A0A1W2PPI3	338 aa		7.25	□□□□□ -1.25
YBX3-208	ENST00000540447	C15orf61	A6NNL5	157 aa		7.25	□□□□□ -1.25
YBX3-208	ENST00000540447	LINC00158	P58513	81 aa		7.25	□□□□□ -1.25
YBX3-208	ENST00000540447	TMEM86B	Q8N661	226 aa		7.25	□□□□□ -1.25
YBX3-208	ENST00000540447	OSR1	Q8TAX0	266 aa	Predicted RBP	7.25	□□□□□ -1.25
YBX3-208	ENST00000540447	RP1	P56715	2156 aa		7.25	□□□□□ -1.25
YBX3-208	ENST00000540447	SAA2-SAA4	A0A096LPE2	208 aa		7.24	□□□□□ -1.25
YBX3-208	ENST00000540447	C2CD4D	B7Z1M9	353 aa		7.24	□□□□□ -1.25
YBX3-208	ENST00000540447	NDUFV3	P56181	108 aa	Known RBP	7.24	□□□□□ -1.25
YBX3-208	ENST00000540447	FHL5	Q5TD97	284 aa		7.24	□□□□□ -1.25
YBX3-208	ENST00000540447	DDX60L	Q5H9U9	1706 aa	Known RBP	7.24	□□□□□ -1.25
YBX3-208	ENST00000540447	SMCHD1	A6NHR9	2005 aa		7.24	□□□□□ -1.25
YBX3-208	ENST00000540447	LIF	P15018	202 aa		7.24	□□□□□ -1.25
YBX3-208	ENST00000540447	PTH2	Q96A98	100 aa		7.24	□□□□□ -1.25
YBX3-208	ENST00000540447	ZNF501	Q96CX3	271 aa	Predicted RBP	7.24	□□□□□ -1.25
YBX3-208	ENST00000540447	IGKV1-8	A0A0C4DH67	115 aa		7.24	□□□□□ -1.25
YBX3-208	ENST00000540447	LEPROT	O15243	131 aa		7.24	□□□□□ -1.25
YBX3-208	ENST00000540447		V9GYV3	84 aa		7.24	□□□□□ -1.25
YBX3-208	ENST00000540447		A0A1W2PR77	199 aa		7.24	□□□□□ -1.25
YBX3-208	ENST00000540447	IQCF6	A8MYZ5	107 aa		7.24	□□□□□ -1.25

Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms