RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 CHRNA7P36544 502 aa9.47□□□□□ -0.89
CLIP1-208ENST00000537004 CDC34P49427 236 aaPredicted RBP9.47□□□□□ -0.89
CLIP1-208ENST00000537004 CEBPGP53567 150 aa9.47□□□□□ -0.89
CLIP1-208ENST00000537004 ERHP84090 104 aaKnown RBP9.47□□□□□ -0.89
CLIP1-208ENST00000537004 MRGPRG-AS1Q2M3A8 158 aa9.47□□□□□ -0.89
CLIP1-208ENST00000537004 AKIRIN2Q53H80 203 aa9.47□□□□□ -0.89
CLIP1-208ENST00000537004 GCSAMLQ5JQS6 135 aa9.47□□□□□ -0.89
CLIP1-208ENST00000537004 MIC13Q5XKP0 118 aa9.47□□□□□ -0.89
CLIP1-208ENST00000537004 DYNAPQ8N1N2 210 aa9.47□□□□□ -0.89
CLIP1-208ENST00000537004 TEX45Q8NA69 505 aa9.47□□□□□ -0.89
CLIP1-208ENST00000537004 KCNIP2Q9NS61 270 aa9.47□□□□□ -0.89
CLIP1-208ENST00000537004 PXMP4Q9Y6I8 212 aa9.47□□□□□ -0.89
CLIP1-208ENST00000537004 A0A1W2PPI3 338 aa9.46□□□□□ -0.89
CLIP1-208ENST00000537004 SEC14L6B5MCN3 397 aa9.46□□□□□ -0.89
CLIP1-208ENST00000537004 M0R036 132 aa9.46□□□□□ -0.89
CLIP1-208ENST00000537004 YIF1AO95070 293 aa9.46□□□□□ -0.89
CLIP1-208ENST00000537004 CNTFRP26992 372 aa9.46□□□□□ -0.89
CLIP1-208ENST00000537004 HTR1DP28221 377 aa9.46□□□□□ -0.89
CLIP1-208ENST00000537004 WT1-ASQ06250 92 aa9.46□□□□□ -0.89
CLIP1-208ENST00000537004 PMS2P11Q13670 270 aa9.46□□□□□ -0.89
CLIP1-208ENST00000537004 TMEM86BQ8N661 226 aa9.46□□□□□ -0.89
CLIP1-208ENST00000537004 TMPRSS5Q9H3S3 457 aa9.46□□□□□ -0.89
CLIP1-208ENST00000537004 H3BUX3 64 aa9.46□□□□□ -0.9
CLIP1-208ENST00000537004 MT-ND4LP03901 98 aa9.46□□□□□ -0.9
CLIP1-208ENST00000537004 RAB31Q13636 194 aa9.46□□□□□ -0.9
CLIP1-208ENST00000537004 PSG5Q15238 335 aa9.46□□□□□ -0.9
CLIP1-208ENST00000537004 LY6EQ16553 131 aa9.46□□□□□ -0.9
CLIP1-208ENST00000537004 TPTE2P1Q5T6R2 138 aa9.46□□□□□ -0.9
CLIP1-208ENST00000537004 SSX3Q99909 188 aa9.46□□□□□ -0.9
CLIP1-208ENST00000537004 C20orf24Q9BUV8 137 aa9.46□□□□□ -0.9
CLIP1-208ENST00000537004 TUBA4BQ9H853 241 aa9.46□□□□□ -0.9
CLIP1-208ENST00000537004 VAX2Q9UIW0 290 aa9.46□□□□□ -0.9
CLIP1-208ENST00000537004 PUS1Q9Y606 427 aaKnown RBP eCLIP9.46□□□□□ -0.9
CLIP1-208ENST00000537004 CRYGBP07316 175 aa9.45□□□□□ -0.9
CLIP1-208ENST00000537004 SNRNP70P08621 437 aaKnown RBP9.45□□□□□ -0.9
CLIP1-208ENST00000537004 PRSS8Q16651 343 aa9.45□□□□□ -0.9
CLIP1-208ENST00000537004 MMD2Q8IY49 270 aa9.45□□□□□ -0.9
CLIP1-208ENST00000537004 RPS10P5Q9NQ39 176 aa9.45□□□□□ -0.9
CLIP1-208ENST00000537004 DPM3Q9P2X0 92 aa9.45□□□□□ -0.9
CLIP1-208ENST00000537004 VPREB3Q9UKI3 123 aa9.45□□□□□ -0.9
CLIP1-208ENST00000537004 SIGLEC9Q9Y336 463 aa9.45□□□□□ -0.9
CLIP1-208ENST00000537004 DMRT1Q9Y5R6 373 aa9.45□□□□□ -0.9
CLIP1-208ENST00000537004 A0A1W2PPV4 95 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 C7orf77A4D0Y5 90 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 ODF3BA8MYP8 253 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 H3BQ15 152 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 TIMM23O14925 209 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 CEACAM3P40198 252 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 AKR1C3P42330 323 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 LGALS4P56470 323 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 CD69Q07108 199 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 FABP9Q0Z7S8 132 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 GAMTQ14353 236 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 TMEM144Q7Z5S9 345 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 STPG3Q8N7X2 389 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 HIST1H2BAQ96A08 127 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 P2RX4Q99571 388 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 ACTL6BO94805 426 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 RPL29P47914 159 aaKnown RBP9.44□□□□□ -0.9
CLIP1-208ENST00000537004 MEF2BQ02080 365 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-208ENST00000537004 SSX2Q16385 188 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 TNXAQ16473 311 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 PIFOQ8TCI5 191 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 RNF5Q99942 180 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 ZNF747Q9BV97 191 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 HILPDAQ9Y5L2 63 aa9.44□□□□□ -0.9
CLIP1-208ENST00000537004 IGKV1OR2-108A0A075B7D4 117 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 MAS1LP35410 378 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 PSMB3P49720 205 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 SUB1P53999 127 aaKnown RBP eCLIP9.43□□□□□ -0.9
CLIP1-208ENST00000537004 RHEBQ15382 184 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 MLANAQ16655 118 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 FAM90A2PQ658T7 463 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 Q6ZSV7 163 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 SLC35E3Q7Z769 313 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 PPP1R27Q86WC6 154 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 LINC01006Q8NI28 216 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 GATAD1Q8WUU5 269 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 CACNG8Q8WXS5 425 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 NIPSNAP3BQ9BS92 247 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 MEGF9Q9H1U4 602 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 MANBALQ9NQG1 85 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 MEGF8Q7Z7M0 2845 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 WNK1Q9H4A3 2382 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 IGLC7A0M8Q6 106 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 REG1AP05451 166 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 GPX4P36969 197 aaPredicted RBP9.43□□□□□ -0.9
CLIP1-208ENST00000537004 TAGLN2P37802 199 aaKnown RBP9.43□□□□□ -0.9
CLIP1-208ENST00000537004 RPL27AP46776 148 aaKnown RBP9.43□□□□□ -0.9
CLIP1-208ENST00000537004 CD81P60033 236 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 PRR20EP86478 221 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 PRR20CP86479 221 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 PRR20DP86480 221 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 PRR20BP86481 221 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 PRR20AP86496 221 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 MRPL41Q8IXM3 137 aaKnown RBP9.43□□□□□ -0.9
CLIP1-208ENST00000537004 OR4F5Q8NH21 305 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 RNASEH2CQ8TDP1 164 aaKnown RBP9.43□□□□□ -0.9
CLIP1-208ENST00000537004 FBXL15Q9H469 300 aa9.43□□□□□ -0.9
CLIP1-208ENST00000537004 SLC45A2Q9UMX9 530 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms