RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 RRN3P1Q2M238 152 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 RSPO1Q2MKA7 263 aaPredicted RBP2.26□□□□□ -2.05
CD44-229ENST00000528672 VMA21Q3ZAQ7 101 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 LCE3EQ5T5B0 92 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 OR2T2Q6IF00 324 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 VN1R4Q7Z5H5 301 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 RPS19BP1Q86WX3 136 aaKnown RBP2.26□□□□□ -2.05
CD44-229ENST00000528672 PRR15Q8IV56 129 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 LINC00612Q8N6U2 182 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 Q8N9W7 124 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 OR4B1Q8NGF8 309 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 OR4K13Q8NH42 304 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 TMEM158Q8WZ71 300 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 NEURL3Q96EH8 262 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 ZNF799Q96GE5 643 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 YPEL2Q96QA6 119 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 METTL26Q96S19 204 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 GPX7Q96SL4 187 aaPredicted RBP2.26□□□□□ -2.05
CD44-229ENST00000528672 NMNAT3Q96T66 252 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 TM2D3Q9BRN9 247 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 RTL8AQ9BWD3 113 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 AICDAQ9GZX7 198 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 DUSP21Q9H596 190 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 C21orf62Q9NYP8 219 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 CCDC167Q9P0B6 97 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 MARCOQ9UEW3 520 aaPredicted RBP2.26□□□□□ -2.05
CD44-229ENST00000528672 PCTPQ9UKL6 214 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 TPRKBQ9Y3C4 175 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 SYNJ1O43426 1573 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 ADAMTS9Q9P2N4 1935 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 KIF13BQ9NQT8 1826 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 KIF1AQ12756 1690 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 BAZ2AQ9UIF9 1905 aaKnown RBP2.25□□□□□ -2.05
CD44-229ENST00000528672 MTCL1Q9Y4B5 1905 aaKnown RBP2.25□□□□□ -2.05
CD44-229ENST00000528672 BRCA1P38398 1863 aaKnown RBP2.25□□□□□ -2.05
CD44-229ENST00000528672 SMIM26A0A096LP01 95 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 TRAV8-6A0A0B4J262 113 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 IGHV1-69DA0A0B4J2H0 117 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 C7orf66A4D0T2 115 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 MCRIP1C9JLW8 97 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 INS-IGF2F8WCM5 200 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 H0Y9J4 135 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 H3BP45 60 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 GEMIN2O14893 280 aaKnown RBP2.25□□□□□ -2.05
CD44-229ENST00000528672 GSTZ1O43708 216 aaPredicted RBP2.25□□□□□ -2.05
CD44-229ENST00000528672 SFT2D2O95562 160 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 NAPSAO96009 420 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 IGKV3-15P01624 115 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 LINC00032P0C843 101 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 IGLC2P0DOY2 106 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 IGLC3P0DOY3 106 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 PPIBP23284 216 aaKnown RBP2.25□□□□□ -2.05
CD44-229ENST00000528672 SRP14P37108 136 aaKnown RBP2.25□□□□□ -2.05
CD44-229ENST00000528672 RPS10P46783 165 aaKnown RBP2.25□□□□□ -2.05
CD44-229ENST00000528672 INSL3P51460 131 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 ZNF136P52737 540 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 KRTAP10-3P60369 221 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 PPP1CAP62136 330 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 ERCC8Q13216 396 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 HES1Q14469 280 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 ELOCQ15369 112 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 FAM222AQ5U5X8 452 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 ZNF660Q6AZW8 331 aaPredicted RBP2.25□□□□□ -2.05
CD44-229ENST00000528672 XAF1Q6GPH4 301 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 MRPL54Q6P161 138 aaKnown RBP2.25□□□□□ -2.05
CD44-229ENST00000528672 SHISA6Q6ZSJ9 500 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 SSX8Q7RTT4 187 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 SLC22A24Q8N4F4 322 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 LINC00337Q8N6G1 96 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 OR5D16Q8NGK9 328 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 OR52P1PQ8NH57 321 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 SGMS2Q8NHU3 365 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 TWIST2Q8WVJ9 160 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 BORCS8Q96FH0 119 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 LINC00526Q96FQ7 95 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 PEBP4Q96S96 227 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 IMMP2LQ96T52 175 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 TIMM17AQ99595 171 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 MRPL20Q9BYC9 149 aaKnown RBP2.25□□□□□ -2.05
CD44-229ENST00000528672 PLA2G2FQ9BZM2 168 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 C16orf95Q9H693 158 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 NOP16Q9Y3C1 178 aaKnown RBP2.25□□□□□ -2.05
CD44-229ENST00000528672 ECM29Q5VYK3 1845 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 ATG2AQ2TAZ0 1938 aa2.25□□□□□ -2.05
CD44-229ENST00000528672 ADAMTSL1Q8N6G6 1762 aa2.24□□□□□ -2.05
CD44-229ENST00000528672 TRAV27A0A087WT01 109 aa2.24□□□□□ -2.05
CD44-229ENST00000528672 TRAV19A0A0A6YYK7 116 aa2.24□□□□□ -2.05
CD44-229ENST00000528672 IGKV1-8A0A0C4DH67 115 aa2.24□□□□□ -2.05
CD44-229ENST00000528672 MUC21A0A0G2JKD1 596 aa2.24□□□□□ -2.05
CD44-229ENST00000528672 LOC107986453A0A1B0GWG9 222 aa2.24□□□□□ -2.05
CD44-229ENST00000528672 C7orf77A4D0Y5 90 aa2.24□□□□□ -2.05
CD44-229ENST00000528672 ARRDC5A6NEK1 342 aa2.24□□□□□ -2.05
CD44-229ENST00000528672 HMSDA8MTL9 139 aa2.24□□□□□ -2.05
CD44-229ENST00000528672 ZNF705FA8MVS1 300 aaPredicted RBP2.24□□□□□ -2.05
CD44-229ENST00000528672 KLLNB2CW77 178 aa2.24□□□□□ -2.05
CD44-229ENST00000528672 PIRO00625 290 aa2.24□□□□□ -2.05
CD44-229ENST00000528672 FFAR1O14842 300 aa2.24□□□□□ -2.05
CD44-229ENST00000528672 SLC37A4O43826 429 aa2.24□□□□□ -2.05
CD44-229ENST00000528672 NDUFS5O43920 106 aa2.24□□□□□ -2.05
CD44-229ENST00000528672 HYPMO75409 117 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms