RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 C10orf55Q5SWW7 151 aa14.6□□□□□ -0.07
NPHP4-209ENST00000489180 NUP37Q8NFH4 326 aa14.6□□□□□ -0.07
NPHP4-209ENST00000489180 NABP1Q96AH0 204 aa14.6□□□□□ -0.07
NPHP4-209ENST00000489180 LCTP09848 1927 aa14.6□□□□□ -0.07
NPHP4-209ENST00000489180 TRAV12-3A0A0B4J271 114 aa14.59□□□□□ -0.07
NPHP4-209ENST00000489180 TET1Q8NFU7 2136 aa14.59□□□□□ -0.07
NPHP4-209ENST00000489180 CEACAM1P13688 526 aa14.59□□□□□ -0.07
NPHP4-209ENST00000489180 NUTF2P61970 127 aaKnown RBP14.59□□□□□ -0.07
NPHP4-209ENST00000489180 H3BRM9 83 aa14.59□□□□□ -0.07
NPHP4-209ENST00000489180 COLCA1Q6ZS62 124 aa14.59□□□□□ -0.07
NPHP4-209ENST00000489180 LOC285556D6RIA3 1793 aa14.59□□□□□ -0.07
NPHP4-209ENST00000489180 RIPPLY3P57055 190 aa14.59□□□□□ -0.07
NPHP4-209ENST00000489180 FOXL1Q12952 345 aa14.59□□□□□ -0.07
NPHP4-209ENST00000489180 FAM168AQ92567 244 aa14.59□□□□□ -0.07
NPHP4-209ENST00000489180 CRIM1Q9NZV1 1036 aa14.58□□□□□ -0.07
NPHP4-209ENST00000489180 PVRIGQ6DKI7 326 aa14.58□□□□□ -0.08
NPHP4-209ENST00000489180 ST20Q9HBF5 79 aa14.58□□□□□ -0.08
NPHP4-209ENST00000489180 ZNF581Q9P0T4 197 aa14.58□□□□□ -0.08
NPHP4-209ENST00000489180 ZNF318Q5VUA4 2279 aa14.58□□□□□ -0.08
NPHP4-209ENST00000489180 PAX1P15863 534 aa14.58□□□□□ -0.08
NPHP4-209ENST00000489180 CSRP2Q16527 193 aa14.58□□□□□ -0.08
NPHP4-209ENST00000489180 OR5A1Q8NGJ0 315 aa14.58□□□□□ -0.08
NPHP4-209ENST00000489180 GTF3AQ92664 365 aaKnown RBP14.58□□□□□ -0.08
NPHP4-209ENST00000489180 FOXF2Q12947 444 aa14.58□□□□□ -0.08
NPHP4-209ENST00000489180 MTURNQ8N3F0 131 aa14.58□□□□□ -0.08
NPHP4-209ENST00000489180 ZNF883P0CG24 379 aa14.58□□□□□ -0.08
NPHP4-209ENST00000489180 DMRTC2Q8IXT2 367 aaPredicted RBP14.58□□□□□ -0.08
NPHP4-209ENST00000489180 DEFB104AQ8WTQ1 72 aa14.58□□□□□ -0.08
NPHP4-209ENST00000489180 SRD5A1P18405 259 aa14.57□□□□□ -0.08
NPHP4-209ENST00000489180 RHOGP84095 191 aa14.57□□□□□ -0.08
NPHP4-209ENST00000489180 TSKUQ8WUA8 353 aa14.57□□□□□ -0.08
NPHP4-209ENST00000489180 TRBV7-9A0A0J9YWB2 115 aa14.57□□□□□ -0.08
NPHP4-209ENST00000489180 TIMM23O14925 209 aa14.57□□□□□ -0.08
NPHP4-209ENST00000489180 ASCL2Q99929 193 aa14.57□□□□□ -0.08
NPHP4-209ENST00000489180 GGTLC1Q9BX51 225 aa14.57□□□□□ -0.08
NPHP4-209ENST00000489180 BRWD3Q6RI45 1802 aa14.57□□□□□ -0.08
NPHP4-209ENST00000489180 ZNF585BQ52M93 769 aa14.57□□□□□ -0.08
NPHP4-209ENST00000489180 TRAV3A0A0B4J244 114 aa14.57□□□□□ -0.08
NPHP4-209ENST00000489180 DPM2O94777 84 aa14.57□□□□□ -0.08
NPHP4-209ENST00000489180 SAMD13Q5VXD3 122 aa14.57□□□□□ -0.08
NPHP4-209ENST00000489180 LINC00527Q9UJ94 153 aa14.57□□□□□ -0.08
NPHP4-209ENST00000489180 TRAV8-2A0A0B4J237 113 aa14.56□□□□□ -0.08
NPHP4-209ENST00000489180 MLNRO43193 412 aa14.56□□□□□ -0.08
NPHP4-209ENST00000489180 SRSF1Q07955 248 aaKnown RBP eCLIP14.56□□□□□ -0.08
NPHP4-209ENST00000489180 Q5PR19 223 aa14.56□□□□□ -0.08
NPHP4-209ENST00000489180 GGNQ86UU5 652 aa14.56□□□□□ -0.08
NPHP4-209ENST00000489180 IGHV3-64A0A075B6Q5 118 aa14.56□□□□□ -0.08
NPHP4-209ENST00000489180 IGHV1-46P01743 117 aa14.56□□□□□ -0.08
NPHP4-209ENST00000489180 FXYD7P58549 80 aa14.56□□□□□ -0.08
NPHP4-209ENST00000489180 TEX29Q8N6K0 151 aa14.56□□□□□ -0.08
NPHP4-209ENST00000489180 SEPSECSQ9HD40 501 aaKnown RBP14.56□□□□□ -0.08
NPHP4-209ENST00000489180 NPIPB5A8MRT5 1133 aa14.56□□□□□ -0.08
NPHP4-209ENST00000489180 CNTFRP26992 372 aa14.56□□□□□ -0.08
NPHP4-209ENST00000489180 NAA38Q9BRA0 125 aaKnown RBP14.56□□□□□ -0.08
NPHP4-209ENST00000489180 IGKV2-40A0A087WW87 121 aaPredicted RBP14.55□□□□□ -0.08
NPHP4-209ENST00000489180 IGKV2D-40P01614 121 aaPredicted RBP14.55□□□□□ -0.08
NPHP4-209ENST00000489180 VCX2Q9H322 139 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 TRGV2A0A075B6R0 118 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 PSPNO60542 156 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 MYOD1P15172 320 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 ABCA7Q8IZY2 2146 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 BMPERQ8N8U9 685 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 MGST2Q99735 147 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 TRAV2A0A0B4J234 112 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 IGKV1-5P01602 117 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 HTN3P15516 51 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 EXOC3-AS1Q8N2X6 119 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 NCR2O95944 276 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 CLPSP04118 112 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 OR4X2Q8NGF9 303 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 C8orf46Q8TAG6 207 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 METRNQ9UJH8 293 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 CHTOPQ9Y3Y2 248 aaKnown RBP14.55□□□□□ -0.08
NPHP4-209ENST00000489180 TRBV24-1A0A075B6N3 115 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 CD33P20138 364 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 SLC50A1Q9BRV3 221 aa14.55□□□□□ -0.08
NPHP4-209ENST00000489180 STAG3L3P0CL85 134 aa14.54□□□□□ -0.08
NPHP4-209ENST00000489180 RPP25LQ8N5L8 163 aaKnown RBP14.54□□□□□ -0.08
NPHP4-209ENST00000489180 BEND2Q8NDZ0 799 aa14.54□□□□□ -0.08
NPHP4-209ENST00000489180 ORAOV1Q8WV07 137 aa14.54□□□□□ -0.08
NPHP4-209ENST00000489180 IGKCP01834 107 aa14.54□□□□□ -0.08
NPHP4-209ENST00000489180 LDLRAD2Q5SZI1 272 aa14.54□□□□□ -0.08
NPHP4-209ENST00000489180 TMEM242Q9NWH2 141 aa14.54□□□□□ -0.08
NPHP4-209ENST00000489180 TDGF1P13385 188 aa14.54□□□□□ -0.08
NPHP4-209ENST00000489180 SPTA1P02549 2419 aa14.54□□□□□ -0.08
NPHP4-209ENST00000489180 TMEM256Q8N2U0 113 aa14.54□□□□□ -0.08
NPHP4-209ENST00000489180 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.53□□□□□ -0.08
NPHP4-209ENST00000489180 IFI27P40305 119 aaPredicted RBP14.53□□□□□ -0.08
NPHP4-209ENST00000489180 LINC00205P59089 165 aa14.53□□□□□ -0.08
NPHP4-209ENST00000489180 PNRC2Q9NPJ4 139 aaKnown RBP14.53□□□□□ -0.08
NPHP4-209ENST00000489180 CRIPAKQ8N1N5 446 aa14.53□□□□□ -0.08
NPHP4-209ENST00000489180 FAM90A9PA6NNJ1 464 aa14.53□□□□□ -0.08
NPHP4-209ENST00000489180 LILRA1O75019 489 aa14.53□□□□□ -0.08
NPHP4-209ENST00000489180 RPL15P61313 204 aaKnown RBP14.53□□□□□ -0.08
NPHP4-209ENST00000489180 LINC01551Q86U37 167 aa14.53□□□□□ -0.08
NPHP4-209ENST00000489180 TMEM105Q8N8V8 129 aa14.53□□□□□ -0.08
NPHP4-209ENST00000489180 CHCHD1Q96BP2 118 aaKnown RBP14.53□□□□□ -0.08
NPHP4-209ENST00000489180 HOXA3O43365 443 aaPredicted RBP14.53□□□□□ -0.08
NPHP4-209ENST00000489180 RALGAPA1Q6GYQ0 2036 aa14.53□□□□□ -0.08
NPHP4-209ENST00000489180 RTTNQ86VV8 2226 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms