RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 KCPQ6ZWJ8 1503 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 NAV3Q8IVL0 2385 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 TAF1LQ8IZX4 1826 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 TRAV3A0A0B4J244 114 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 LINC00854A0A1B0GVQ3 168 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 BUB1B-PAK6H3BSN5 160 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 TGOLN2O43493 480 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 PRH1P02810 166 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 RBP1P09455 135 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 OR4E1P0C645 316 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 HIST1H1TP22492 207 aaPredicted RBP0.18□□□□□ -2.38
VPS50-217ENST00000485140 RPL5P46777 297 aaKnown RBP0.18□□□□□ -2.38
VPS50-217ENST00000485140 SULT1A1P50225 295 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 ESRGQ1W209 222 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 SPINK9Q5DT21 86 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 BRMS1LQ5PSV4 323 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 TMEM254Q8TBM7 123 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 PTH2Q96A98 100 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 DCSTAMPQ9H295 470 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 OR51V1Q9H2C8 321 aa0.18□□□□□ -2.38
VPS50-217ENST00000485140 V9GYY5 206 aaPredicted RBP0.18□□□□□ -2.38
VPS50-217ENST00000485140 ASCC3Q8N3C0 2202 aaKnown RBP0.17□□□□□ -2.38
VPS50-217ENST00000485140 A0A087X0T9 212 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 IGLV3-32A0A0A0MS00 114 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 TRBV6-4A0A1B0GX49 114 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 J3QRK9 145 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 IGLV3-1P01715 115 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 SMIM10L2AP0DMW4 78 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 SMIM10L2BP0DMW5 78 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 HIST1H1EP10412 219 aaKnown RBP0.17□□□□□ -2.38
VPS50-217ENST00000485140 CASP1P29466 404 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 RHOBP62745 196 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 TSNQ15631 228 aaKnown RBP0.17□□□□□ -2.38
VPS50-217ENST00000485140 DEFB113Q30KQ7 82 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 C2orf82Q6UX34 121 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 LINC00575Q6W349 94 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 DOCK3Q8IZD9 2030 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 ST6GALNAC3Q8NDV1 305 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 OR2T10Q8NGZ9 312 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 TSPAN32Q96QS1 320 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 HIST1H2BLQ99880 126 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 PRRT1Q99946 306 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 TLNRD1Q9H1K6 362 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 DOCK5Q9H7D0 1870 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 C14orf105Q9NVL8 296 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 PLAC8Q9NZF1 115 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 CYSLTR1Q9Y271 337 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 ECM29Q5VYK3 1845 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 MAP3K5Q99683 1374 aa0.17□□□□□ -2.38
VPS50-217ENST00000485140 FRAS1Q86XX4 4008 aa0.16□□□□□ -2.38
VPS50-217ENST00000485140 COL1A1P02452 1464 aaPredicted RBP0.16□□□□□ -2.38
VPS50-217ENST00000485140 SBF1O95248 1867 aa0.16□□□□□ -2.38
VPS50-217ENST00000485140 TLCD2A6NGC4 264 aa0.16□□□□□ -2.38
VPS50-217ENST00000485140 OR4C46A6NHA9 309 aa0.16□□□□□ -2.38
VPS50-217ENST00000485140 M0R036 132 aa0.16□□□□□ -2.38
VPS50-217ENST00000485140 CETN3O15182 167 aa0.16□□□□□ -2.38
VPS50-217ENST00000485140 CCL16O15467 120 aa0.16□□□□□ -2.38
VPS50-217ENST00000485140 DHFRP00374 187 aa0.16□□□□□ -2.38
VPS50-217ENST00000485140 OR2F1Q13607 317 aa0.16□□□□□ -2.38
VPS50-217ENST00000485140 ACOT6Q3I5F7 207 aaPredicted RBP0.16□□□□□ -2.38
VPS50-217ENST00000485140 LINC01554Q52M75 96 aa0.16□□□□□ -2.38
VPS50-217ENST00000485140 C8orf74Q6P047 294 aa0.16□□□□□ -2.38
VPS50-217ENST00000485140 TMEM86BQ8N661 226 aa0.16□□□□□ -2.38
VPS50-217ENST00000485140 OR11H6Q8NGC7 330 aa0.16□□□□□ -2.38
VPS50-217ENST00000485140 PPP1R2P1Q96PQ5 205 aa0.16□□□□□ -2.38
VPS50-217ENST00000485140 CMSS1Q9BQ75 279 aaKnown RBP0.16□□□□□ -2.38
VPS50-217ENST00000485140 ORMDL1Q9P0S3 153 aa0.16□□□□□ -2.38
VPS50-217ENST00000485140 GUCA1BQ9UMX6 200 aa0.16□□□□□ -2.38
VPS50-217ENST00000485140 TNFSF18Q9UNG2 199 aa0.16□□□□□ -2.38
VPS50-217ENST00000485140 CACNA1EQ15878 2313 aa0.15□□□□□ -2.38
VPS50-217ENST00000485140 KDM6AO15550 1401 aaPredicted RBP0.15□□□□□ -2.39
VPS50-217ENST00000485140 IGHV1-58A0A0C4DH39 117 aa0.15□□□□□ -2.39
VPS50-217ENST00000485140 TCRBV4S1A1TA0A5B7 111 aa0.15□□□□□ -2.39
VPS50-217ENST00000485140 SMIM23A6NLE4 172 aa0.15□□□□□ -2.39
VPS50-217ENST00000485140 NUPR1O60356 82 aa0.15□□□□□ -2.39
VPS50-217ENST00000485140 OR2J2O76002 312 aa0.15□□□□□ -2.39
VPS50-217ENST00000485140 AP3S2P59780 193 aa0.15□□□□□ -2.39
VPS50-217ENST00000485140 RPS20P60866 119 aaKnown RBP0.15□□□□□ -2.39
VPS50-217ENST00000485140 SPRNQ5BIV9 151 aa0.15□□□□□ -2.39
VPS50-217ENST00000485140 GDPD1Q8N9F7 314 aa0.15□□□□□ -2.39
VPS50-217ENST00000485140 OR8D4Q8NGM9 314 aa0.15□□□□□ -2.39
VPS50-217ENST00000485140 C2orf50Q96LR7 162 aa0.15□□□□□ -2.39
VPS50-217ENST00000485140 GPER1Q99527 375 aa0.15□□□□□ -2.39
VPS50-217ENST00000485140 MRPL27Q9P0M9 148 aaKnown RBP0.15□□□□□ -2.39
VPS50-217ENST00000485140 VPS29Q9UBQ0 182 aa0.15□□□□□ -2.39
VPS50-217ENST00000485140 PKIGQ9Y2B9 76 aa0.15□□□□□ -2.39
VPS50-217ENST00000485140 UTP11Q9Y3A2 253 aaKnown RBP0.15□□□□□ -2.39
VPS50-217ENST00000485140 FAT4Q6V0I7 4981 aa0.15□□□□□ -2.39
VPS50-217ENST00000485140 TNS3Q68CZ2 1445 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 ASH1LQ9NR48 2969 aaKnown RBP0.14□□□□□ -2.39
VPS50-217ENST00000485140 TGIF2-C20orf24A0A0A6YYL0 155 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 TRAV26-2A0A0B4J265 109 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 IFNA5P01569 189 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 TTRP02766 147 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 SPINK7P58062 85 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 HAGHLQ6PII5 290 aaPredicted RBP0.14□□□□□ -2.39
VPS50-217ENST00000485140 OR6V1Q8N148 313 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 EXOC3-AS1Q8N2X6 119 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 OR52R1Q8NGF1 315 aa0.14□□□□□ -2.39
VPS50-217ENST00000485140 OR2T35Q8NGX2 323 aa0.14□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms