RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 UBE2NLQ5JXB2 153 aa12.2□□□□□ -0.46
VIM-204ENST00000478746 ZNF705AQ6ZN79 300 aaPredicted RBP12.2□□□□□ -0.46
VIM-204ENST00000478746 S100A16Q96FQ6 103 aaKnown RBP12.2□□□□□ -0.46
VIM-204ENST00000478746 FAM212BQ9NTI7 297 aaPredicted RBP12.2□□□□□ -0.46
VIM-204ENST00000478746 DKK2Q9UBU2 259 aa12.2□□□□□ -0.46
VIM-204ENST00000478746 ANAPC10Q9UM13 185 aa12.2□□□□□ -0.46
VIM-204ENST00000478746 IGHV3OR16-12A0A075B7B8 117 aa12.19□□□□□ -0.46
VIM-204ENST00000478746 TEX48A0A1B0GUV7 120 aa12.19□□□□□ -0.46
VIM-204ENST00000478746 ZNF705FA8MVS1 300 aaPredicted RBP12.19□□□□□ -0.46
VIM-204ENST00000478746 CLN5O75503 358 aa12.19□□□□□ -0.46
VIM-204ENST00000478746 SCGB2A1O75556 95 aa12.19□□□□□ -0.46
VIM-204ENST00000478746 ZNF705DP0CH99 300 aaPredicted RBP12.19□□□□□ -0.46
VIM-204ENST00000478746 ZNF705BP0CI00 300 aaPredicted RBP12.19□□□□□ -0.46
VIM-204ENST00000478746 SUB1P53999 127 aaKnown RBP eCLIP12.19□□□□□ -0.46
VIM-204ENST00000478746 PHLDA2Q53GA4 152 aa12.19□□□□□ -0.46
VIM-204ENST00000478746 FAM222AQ5U5X8 452 aa12.19□□□□□ -0.46
VIM-204ENST00000478746 MCFD2Q8NI22 146 aa12.19□□□□□ -0.46
VIM-204ENST00000478746 TMED3Q9Y3Q3 217 aa12.19□□□□□ -0.46
VIM-204ENST00000478746 RFNGQ9Y644 331 aa12.19□□□□□ -0.46
VIM-204ENST00000478746 CORTO00230 105 aa12.18□□□□□ -0.46
VIM-204ENST00000478746 RGS5O15539 181 aa12.18□□□□□ -0.46
VIM-204ENST00000478746 IGKV1-39P01597 117 aa12.18□□□□□ -0.46
VIM-204ENST00000478746 IGKV1D-39P04432 117 aa12.18□□□□□ -0.46
VIM-204ENST00000478746 NAT1P18440 290 aa12.18□□□□□ -0.46
VIM-204ENST00000478746 FAM3BP58499 235 aaPredicted RBP12.18□□□□□ -0.46
VIM-204ENST00000478746 MLANAQ16655 118 aa12.18□□□□□ -0.46
VIM-204ENST00000478746 SLIRPQ9GZT3 109 aaKnown RBP12.18□□□□□ -0.46
VIM-204ENST00000478746 MRPL36Q9P0J6 103 aaKnown RBP12.18□□□□□ -0.46
VIM-204ENST00000478746 U3KQE9 123 aa12.18□□□□□ -0.46
VIM-204ENST00000478746 APOBP04114 4563 aaKnown RBP12.18□□□□□ -0.46
VIM-204ENST00000478746 FAM25AB3EWG3 89 aa12.17□□□□□ -0.46
VIM-204ENST00000478746 FAM25CB3EWG5 89 aa12.17□□□□□ -0.46
VIM-204ENST00000478746 FAM25GB3EWG6 89 aa12.17□□□□□ -0.46
VIM-204ENST00000478746 FAM90A26D6RGX4 464 aa12.17□□□□□ -0.46
VIM-204ENST00000478746 HPGDSO60760 199 aa12.17□□□□□ -0.46
VIM-204ENST00000478746 APOA1P02647 267 aa12.17□□□□□ -0.46
VIM-204ENST00000478746 OXA1LQ15070 435 aa12.17□□□□□ -0.46
VIM-204ENST00000478746 LPCAT3Q6P1A2 487 aa12.17□□□□□ -0.46
VIM-204ENST00000478746 TMEM88Q6PEY1 159 aa12.17□□□□□ -0.46
VIM-204ENST00000478746 C16orf54Q6UWD8 224 aa12.17□□□□□ -0.46
VIM-204ENST00000478746 TBC1D26Q86UD7 250 aa12.17□□□□□ -0.46
VIM-204ENST00000478746 OR4X1Q8NH49 305 aa12.17□□□□□ -0.46
VIM-204ENST00000478746 GLMPQ8WWB7 406 aa12.17□□□□□ -0.46
VIM-204ENST00000478746 MRGPRFQ96AM1 343 aa12.17□□□□□ -0.46
VIM-204ENST00000478746 SEPSECSQ9HD40 501 aaKnown RBP12.17□□□□□ -0.46
VIM-204ENST00000478746 HRH1P35367 487 aa12.16□□□□□ -0.46
VIM-204ENST00000478746 TAS2R20P59543 309 aa12.16□□□□□ -0.46
VIM-204ENST00000478746 TIGITQ495A1 244 aa12.16□□□□□ -0.46
VIM-204ENST00000478746 TMEM69Q5SWH9 247 aa12.16□□□□□ -0.46
VIM-204ENST00000478746 C6orf223Q8N319 242 aa12.16□□□□□ -0.46
VIM-204ENST00000478746 SLC35G3Q8N808 338 aa12.16□□□□□ -0.46
VIM-204ENST00000478746 ATG101Q9BSB4 218 aa12.16□□□□□ -0.46
VIM-204ENST00000478746 FNDC4Q9H6D8 234 aaPredicted RBP12.16□□□□□ -0.46
VIM-204ENST00000478746 TRAV30A0A087WSZ9 112 aa12.15□□□□□ -0.46
VIM-204ENST00000478746 INS-IGF2F8WCM5 200 aa12.15□□□□□ -0.46
VIM-204ENST00000478746 CTDSP2O14595 271 aa12.15□□□□□ -0.46
VIM-204ENST00000478746 IGKV1-17P01599 117 aa12.15□□□□□ -0.46
VIM-204ENST00000478746 HNRNPCP07910 306 aaKnown RBP eCLIP12.15□□□□□ -0.46
VIM-204ENST00000478746 RNASE2P10153 161 aaKnown RBP12.15□□□□□ -0.46
VIM-204ENST00000478746 HLA-DRB4P13762 266 aa12.15□□□□□ -0.46
VIM-204ENST00000478746 ELK1P19419 428 aa12.15□□□□□ -0.46
VIM-204ENST00000478746 PRSS3P35030 304 aa12.15□□□□□ -0.46
VIM-204ENST00000478746 OPRK1P41145 380 aa12.15□□□□□ -0.46
VIM-204ENST00000478746 FXYD7P58549 80 aa12.15□□□□□ -0.46
VIM-204ENST00000478746 TSPAN5P62079 268 aa12.15□□□□□ -0.46
VIM-204ENST00000478746 IZUMO4Q1ZYL8 232 aa12.15□□□□□ -0.46
VIM-204ENST00000478746 LYSMD2Q8IV50 215 aa12.15□□□□□ -0.46
VIM-204ENST00000478746 HLA-DRB4X5D2U9 266 aa12.15□□□□□ -0.46
VIM-204ENST00000478746 NBDYA0A0U1RRE5 68 aa12.14□□□□□ -0.47
VIM-204ENST00000478746 IGKV3-20P01619 116 aa12.14□□□□□ -0.47
VIM-204ENST00000478746 HLA-DMAP28067 261 aa12.14□□□□□ -0.47
VIM-204ENST00000478746 C15orf53Q8NAA6 179 aa12.14□□□□□ -0.47
VIM-204ENST00000478746 Q8WTZ3 238 aa12.14□□□□□ -0.47
VIM-204ENST00000478746 NRN1Q9NPD7 142 aa12.14□□□□□ -0.47
VIM-204ENST00000478746 S100A5P33763 92 aa12.13□□□□□ -0.47
VIM-204ENST00000478746 NKX2-1P43699 371 aaPredicted RBP12.13□□□□□ -0.47
VIM-204ENST00000478746 HOXA1P49639 335 aaPredicted RBP12.13□□□□□ -0.47
VIM-204ENST00000478746 CNPY1Q3B7I2 92 aa12.13□□□□□ -0.47
VIM-204ENST00000478746 MIXL1Q9H2W2 232 aa12.13□□□□□ -0.47
VIM-204ENST00000478746 EXTL2Q9UBQ6 330 aa12.13□□□□□ -0.47
VIM-204ENST00000478746 DNAH5Q8TE73 4624 aa12.12□□□□□ -0.47
VIM-204ENST00000478746 A0A0B4J293 547 aa12.12□□□□□ -0.47
VIM-204ENST00000478746 ETV6P41212 452 aa12.12□□□□□ -0.47
VIM-204ENST00000478746 DAD1P61803 113 aa12.12□□□□□ -0.47
VIM-204ENST00000478746 GSG1LQ6UXU4 331 aa12.12□□□□□ -0.47
VIM-204ENST00000478746 SPATA12Q7Z6I5 190 aa12.12□□□□□ -0.47
VIM-204ENST00000478746 DIRAS2Q96HU8 199 aa12.12□□□□□ -0.47
VIM-204ENST00000478746 PDCD10Q9BUL8 212 aa12.12□□□□□ -0.47
VIM-204ENST00000478746 ENY2Q9NPA8 101 aa12.12□□□□□ -0.47
VIM-204ENST00000478746 YTHDF2Q9Y5A9 579 aaKnown RBP12.12□□□□□ -0.47
VIM-204ENST00000478746 HBE1P02100 147 aa12.11□□□□□ -0.47
VIM-204ENST00000478746 UCP3P55916 312 aa12.11□□□□□ -0.47
VIM-204ENST00000478746 DHODHQ02127 395 aa12.11□□□□□ -0.47
VIM-204ENST00000478746 GDF5OSQ5U4N7 250 aa12.11□□□□□ -0.47
VIM-204ENST00000478746 SIGLEC15Q6ZMC9 328 aa12.11□□□□□ -0.47
VIM-204ENST00000478746 ZNRF2Q8NHG8 242 aa12.11□□□□□ -0.47
VIM-204ENST00000478746 GOLT1BQ9Y3E0 138 aa12.11□□□□□ -0.47
VIM-204ENST00000478746 LOC102723971A0A1B0GUV8 181 aa12.1□□□□□ -0.47
VIM-204ENST00000478746 IGKV1-5P01602 117 aa12.1□□□□□ -0.47
VIM-204ENST00000478746 DEFB1P60022 68 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms