RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 FOXG1P55316 489 aaPredicted RBP7.48□□□□□ -1.21
COL6A3-210ENST00000473258 PSG4Q00888 419 aa7.48□□□□□ -1.21
COL6A3-210ENST00000473258 TMEM52Q8NDY8 209 aa7.48□□□□□ -1.21
COL6A3-210ENST00000473258 C20orf78Q9BR46 151 aa7.48□□□□□ -1.21
COL6A3-210ENST00000473258 IGLV3-25P01717 112 aa7.48□□□□□ -1.21
COL6A3-210ENST00000473258 GATA2P23769 480 aaPredicted RBP7.48□□□□□ -1.21
COL6A3-210ENST00000473258 NBL1P41271 181 aa7.48□□□□□ -1.21
COL6A3-210ENST00000473258 TDRG1Q3Y452 100 aa7.48□□□□□ -1.21
COL6A3-210ENST00000473258 MUSTN1Q8IVN3 82 aa7.48□□□□□ -1.21
COL6A3-210ENST00000473258 MPLKIPQ8TAP9 179 aa7.48□□□□□ -1.21
COL6A3-210ENST00000473258 SARAFQ96BY9 339 aa7.48□□□□□ -1.21
COL6A3-210ENST00000473258 IGLV3-16A0A075B6K0 115 aa7.48□□□□□ -1.21
COL6A3-210ENST00000473258 C3orf22Q8N5N4 141 aa7.48□□□□□ -1.21
COL6A3-210ENST00000473258 TM2D1Q9BX74 207 aa7.48□□□□□ -1.21
COL6A3-210ENST00000473258 A0A1W2PQD3 144 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 MPV17P39210 176 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 VWC2Q2TAL6 325 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 FHL5Q5TD97 284 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 CEP290O15078 2479 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 EGR2P11161 476 aaPredicted RBP7.47□□□□□ -1.21
COL6A3-210ENST00000473258 DTX2Q86UW9 622 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 TIMM21Q9BVV7 248 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 CFC1BP0CG36 223 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 CFC1P0CG37 223 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 ZAR1Q86SH2 424 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 WFDC5Q8TCV5 224 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 RASL10AQ92737 203 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 C8orf44Q96CB5 159 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 CHCHD5Q9BSY4 110 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 PRRG2O14669 202 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 CT62P0C5K7 136 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 NOVP48745 357 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 ECSCRQ19T08 205 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 DEFB127Q9H1M4 99 aa7.47□□□□□ -1.21
COL6A3-210ENST00000473258 IGLV1-36A0A0B4J1U3 117 aa7.46□□□□□ -1.21
COL6A3-210ENST00000473258 hADV29S1A0JD25 119 aa7.46□□□□□ -1.21
COL6A3-210ENST00000473258 NDUFA7O95182 113 aa7.46□□□□□ -1.21
COL6A3-210ENST00000473258 TCRAP04437 139 aa7.46□□□□□ -1.21
COL6A3-210ENST00000473258 CD7P09564 240 aa7.46□□□□□ -1.21
COL6A3-210ENST00000473258 LINC01590Q5TEZ4 76 aa7.46□□□□□ -1.21
COL6A3-210ENST00000473258 FAM104BQ5XKR9 115 aa7.46□□□□□ -1.21
COL6A3-210ENST00000473258 TMEM74BQ9NUR3 256 aa7.46□□□□□ -1.21
COL6A3-210ENST00000473258 KNDC1Q76NI1 1749 aa7.46□□□□□ -1.21
COL6A3-210ENST00000473258 KIAA1210Q9ULL0 1709 aa7.46□□□□□ -1.21
COL6A3-210ENST00000473258 SHISA9B4DS77 424 aa7.46□□□□□ -1.21
COL6A3-210ENST00000473258 CRLF1O75462 422 aa7.46□□□□□ -1.21
COL6A3-210ENST00000473258 HRCT1Q6UXD1 115 aa7.46□□□□□ -1.21
COL6A3-210ENST00000473258 CCL17Q92583 94 aa7.46□□□□□ -1.21
COL6A3-210ENST00000473258 PRDM14Q9GZV8 571 aa7.46□□□□□ -1.21
COL6A3-210ENST00000473258 COL1A1P02452 1464 aaPredicted RBP7.46□□□□□ -1.21
COL6A3-210ENST00000473258 ODF1Q14990 250 aa7.46□□□□□ -1.22
COL6A3-210ENST00000473258 LYZL1Q6UWQ5 148 aa7.46□□□□□ -1.22
COL6A3-210ENST00000473258 Q71RC1 249 aaPredicted RBP7.46□□□□□ -1.22
COL6A3-210ENST00000473258 RNF7Q9UBF6 113 aa7.46□□□□□ -1.22
COL6A3-210ENST00000473258 RFNGQ9Y644 331 aa7.46□□□□□ -1.22
COL6A3-210ENST00000473258 PPRC1Q5VV67 1664 aaKnown RBP7.46□□□□□ -1.22
COL6A3-210ENST00000473258 DXOO77932 396 aaKnown RBP7.46□□□□□ -1.22
COL6A3-210ENST00000473258 SLC25A53Q5H9E4 307 aa7.46□□□□□ -1.22
COL6A3-210ENST00000473258 ALKAL1Q6UXT8 129 aa7.46□□□□□ -1.22
COL6A3-210ENST00000473258 TINCRA0A1B0GVN0 87 aa7.45□□□□□ -1.22
COL6A3-210ENST00000473258 KLK10O43240 276 aa7.45□□□□□ -1.22
COL6A3-210ENST00000473258 CCL14Q16627 93 aa7.45□□□□□ -1.22
COL6A3-210ENST00000473258 CLTCQ00610 1675 aaKnown RBP7.45□□□□□ -1.22
COL6A3-210ENST00000473258 IGKV3D-7A0A0C4DH55 119 aa7.45□□□□□ -1.22
COL6A3-210ENST00000473258 PRR32B1ATL7 298 aa7.45□□□□□ -1.22
COL6A3-210ENST00000473258 NPPCP23582 126 aa7.45□□□□□ -1.22
COL6A3-210ENST00000473258 IGHG3P01860 377 aa7.45□□□□□ -1.22
COL6A3-210ENST00000473258 PAX1P15863 534 aa7.45□□□□□ -1.22
COL6A3-210ENST00000473258 LPAL2Q16609 132 aa7.45□□□□□ -1.22
COL6A3-210ENST00000473258 FAM27BQ5VT28 67 aa7.45□□□□□ -1.22
COL6A3-210ENST00000473258 PMS2CLQ68D20 193 aa7.45□□□□□ -1.22
COL6A3-210ENST00000473258 SHISA2Q6UWI4 295 aa7.45□□□□□ -1.22
COL6A3-210ENST00000473258 TIMM23O14925 209 aa7.45□□□□□ -1.22
COL6A3-210ENST00000473258 CRYGBP07316 175 aa7.45□□□□□ -1.22
COL6A3-210ENST00000473258 ZNF474Q6S9Z5 364 aaPredicted RBP7.45□□□□□ -1.22
COL6A3-210ENST00000473258 RSPO2Q6UXX9 243 aaPredicted RBP7.45□□□□□ -1.22
COL6A3-210ENST00000473258 TMEM54Q969K7 222 aa7.45□□□□□ -1.22
COL6A3-210ENST00000473258 PEAR1Q5VY43 1037 aaPredicted RBP7.45□□□□□ -1.22
COL6A3-210ENST00000473258 CALYQ9NYX4 217 aa7.45□□□□□ -1.22
COL6A3-210ENST00000473258 TRBV19A0A075B6N1 114 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 CR1LQ2VPA4 569 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 LINC00643Q86TS7 51 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 UBE2E2Q96LR5 201 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 DOCK11Q5JSL3 2073 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 IGHV1-45A0A0A0MS14 117 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 SUPT4H1P63272 117 aaKnown RBP7.44□□□□□ -1.22
COL6A3-210ENST00000473258 PRB3Q04118 309 aaPredicted RBP7.44□□□□□ -1.22
COL6A3-210ENST00000473258 GFRA4Q9GZZ7 299 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 PILRAQ9UKJ1 303 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 FAM208AQ9UK61 1670 aaKnown RBP7.44□□□□□ -1.22
COL6A3-210ENST00000473258 SAA2-SAA4A0A096LPE2 208 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 TCRBV4S1A1TA0A5B7 111 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 C2CD4DB7Z1M9 353 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 HLA-DRB4P13762 266 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 ZIC1Q15915 447 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 FAM231DQ6ZW35 169 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 PRIMA1Q86XR5 153 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 LINC00479Q96M42 142 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 HLA-DRB4X5D2U9 266 aa7.44□□□□□ -1.22
COL6A3-210ENST00000473258 DOPEY2Q9Y3R5 2298 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms