RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 TAS2R4Q9NYW5 299 aa0.8□□□□□ -2.28
USP40-209ENST00000452724 TVP23BQ9NYZ1 205 aa0.8□□□□□ -2.28
USP40-209ENST00000452724 EPDR1Q9UM22 224 aa0.8□□□□□ -2.28
USP40-209ENST00000452724 ROBO3Q96MS0 1386 aa0.8□□□□□ -2.28
USP40-209ENST00000452724 TOPBP1Q92547 1522 aa0.79□□□□□ -2.28
USP40-209ENST00000452724 NOTCH1P46531 2555 aa0.79□□□□□ -2.28
USP40-209ENST00000452724 MAST2Q6P0Q8 1798 aa0.79□□□□□ -2.28
USP40-209ENST00000452724 IGKV1-9A0A0C4DH69 117 aa0.79□□□□□ -2.28
USP40-209ENST00000452724 OR2T1O43869 369 aa0.79□□□□□ -2.28
USP40-209ENST00000452724 CRYGAP11844 174 aa0.79□□□□□ -2.28
USP40-209ENST00000452724 FKBP2P26885 142 aaKnown RBP0.79□□□□□ -2.28
USP40-209ENST00000452724 PDE6HQ13956 83 aa0.79□□□□□ -2.28
USP40-209ENST00000452724 OR11H6Q8NGC7 330 aa0.79□□□□□ -2.28
USP40-209ENST00000452724 OR52L1Q8NGH7 329 aa0.79□□□□□ -2.28
USP40-209ENST00000452724 OR51A2Q8NGJ7 313 aa0.79□□□□□ -2.28
USP40-209ENST00000452724 OR13D1Q8NGV5 346 aa0.79□□□□□ -2.28
USP40-209ENST00000452724 SLC50A1Q9BRV3 221 aa0.79□□□□□ -2.28
USP40-209ENST00000452724 KIFC1Q9BW19 673 aa0.79□□□□□ -2.28
USP40-209ENST00000452724 C14orf105Q9NVL8 296 aa0.79□□□□□ -2.28
USP40-209ENST00000452724 HS3ST2Q9Y278 367 aa0.79□□□□□ -2.28
USP40-209ENST00000452724 RALGAPA2Q2PPJ7 1873 aa0.79□□□□□ -2.28
USP40-209ENST00000452724 RTL1A6NKG5 1358 aa0.79□□□□□ -2.28
USP40-209ENST00000452724 IGKV1D-42A0A075B6H8 117 aa0.78□□□□□ -2.28
USP40-209ENST00000452724 A0A087X0T9 212 aa0.78□□□□□ -2.28
USP40-209ENST00000452724 UBL3O95164 117 aa0.78□□□□□ -2.28
USP40-209ENST00000452724 OR4E1P0C645 316 aa0.78□□□□□ -2.28
USP40-209ENST00000452724 SPI1P17947 270 aa0.78□□□□□ -2.28
USP40-209ENST00000452724 MRPS25P82663 173 aaKnown RBP0.78□□□□□ -2.28
USP40-209ENST00000452724 REEP5Q00765 189 aa0.78□□□□□ -2.28
USP40-209ENST00000452724 LCA10Q71F78 164 aa0.78□□□□□ -2.28
USP40-209ENST00000452724 LINC00311Q8N616 119 aa0.78□□□□□ -2.28
USP40-209ENST00000452724 OR4C6Q8NH72 309 aa0.78□□□□□ -2.28
USP40-209ENST00000452724 GNPDA2Q8TDQ7 276 aa0.78□□□□□ -2.28
USP40-209ENST00000452724 ITFG2Q969R8 447 aa0.78□□□□□ -2.28
USP40-209ENST00000452724 SIGMAR1Q99720 223 aa0.78□□□□□ -2.28
USP40-209ENST00000452724 LOC110117498A0A087WWA1 95 aa0.77□□□□□ -2.29
USP40-209ENST00000452724 OR1I1O60431 355 aa0.77□□□□□ -2.29
USP40-209ENST00000452724 IFNA6P05013 189 aa0.77□□□□□ -2.29
USP40-209ENST00000452724 ASAH2BP0C7U1 165 aa0.77□□□□□ -2.29
USP40-209ENST00000452724 HOXA6P31267 233 aa0.77□□□□□ -2.29
USP40-209ENST00000452724 BRS3P32247 399 aa0.77□□□□□ -2.29
USP40-209ENST00000452724 DEFA1P59665 94 aa0.77□□□□□ -2.29
USP40-209ENST00000452724 OR52R1Q8NGF1 315 aa0.77□□□□□ -2.29
USP40-209ENST00000452724 OR8D4Q8NGM9 314 aa0.77□□□□□ -2.29
USP40-209ENST00000452724 SLC25A40Q8TBP6 338 aa0.77□□□□□ -2.29
USP40-209ENST00000452724 MRPL57Q9BQC6 102 aaKnown RBP0.77□□□□□ -2.29
USP40-209ENST00000452724 TMEM133Q9H2Q1 129 aa0.77□□□□□ -2.29
USP40-209ENST00000452724 SLC35A3Q9Y2D2 325 aa0.77□□□□□ -2.29
USP40-209ENST00000452724 ARL2BPQ9Y2Y0 163 aa0.77□□□□□ -2.29
USP40-209ENST00000452724 PIK3C2GO75747 1445 aa0.77□□□□□ -2.29
USP40-209ENST00000452724 STRCQ7RTU9 1775 aa0.77□□□□□ -2.29
USP40-209ENST00000452724 NCOA6Q14686 2063 aaPredicted RBP0.77□□□□□ -2.29
USP40-209ENST00000452724 CCDC144AA2RUR9 1427 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 TRBV19A0A075B6N1 114 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 A0A087WX48 190 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 C2orf70A6NJV1 201 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 HYPMO75409 117 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 PROSCO94903 275 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 CST2P09228 141 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 SMIM17P0DL12 118 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 RAB4BP61018 213 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 RHOGP84095 191 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 TSNQ15631 228 aaKnown RBP0.76□□□□□ -2.29
USP40-209ENST00000452724 LIN52Q52LA3 116 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 LYRM7Q5U5X0 104 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 OR10J5Q8NHC4 309 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 FAM172AQ8WUF8 416 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 SFT2D1Q8WV19 159 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 C4orf3Q8WVX3 66 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 GPR146Q96CH1 333 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 ADAT3Q96EY9 351 aaPredicted RBP0.76□□□□□ -2.29
USP40-209ENST00000452724 CHMP6Q96FZ7 201 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 HIST1H2BLQ99880 126 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 IMUPQ9GZP8 106 aa0.76□□□□□ -2.29
USP40-209ENST00000452724 FBN2P35556 2912 aa0.75□□□□□ -2.29
USP40-209ENST00000452724 ADGRL3Q9HAR2 1447 aa0.75□□□□□ -2.29
USP40-209ENST00000452724 TRAV12-1A0A0B4J245 112 aa0.75□□□□□ -2.29
USP40-209ENST00000452724 M0R2N4 97 aa0.75□□□□□ -2.29
USP40-209ENST00000452724 HSD11B1P28845 292 aa0.75□□□□□ -2.29
USP40-209ENST00000452724 ERP29P30040 261 aaKnown RBP0.75□□□□□ -2.29
USP40-209ENST00000452724 EIF5AP63241 154 aaKnown RBP0.75□□□□□ -2.29
USP40-209ENST00000452724 MRPS15P82914 257 aaKnown RBP0.75□□□□□ -2.29
USP40-209ENST00000452724 TMED2Q15363 201 aa0.75□□□□□ -2.29
USP40-209ENST00000452724 TEX47Q8TBZ9 253 aa0.75□□□□□ -2.29
USP40-209ENST00000452724 LINC00526Q96FQ7 95 aa0.75□□□□□ -2.29
USP40-209ENST00000452724 CCDC88AQ3V6T2 1871 aa0.75□□□□□ -2.29
USP40-209ENST00000452724 FMN1Q68DA7 1419 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 TRBV6-7A0A0A0MS04 114 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 TRAV1-1A0A0B4J248 108 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 TRAV4A0A0B4J268 109 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 FAM159BA6NKW6 160 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 CYB5BO43169 146 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 SULT1B1O43704 296 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 ATP5HO75947 161 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 LYZL6O75951 148 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 SSR2P43308 183 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 CAPZBP47756 277 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 HSPE1P61604 102 aaKnown RBP0.74□□□□□ -2.29
USP40-209ENST00000452724 ARF6P62330 175 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 RRN3P1Q2M238 152 aa0.74□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms