RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 TRBV7-9A0A0J9YWB2 115 aa14.21□□□□□ -0.13
PTPRF-209ENST00000438120 TMEM42Q69YG0 159 aa14.21□□□□□ -0.13
PTPRF-209ENST00000438120 PAX8Q06710 450 aa14.21□□□□□ -0.14
PTPRF-209ENST00000438120 SLC50A1Q9BRV3 221 aa14.21□□□□□ -0.14
PTPRF-209ENST00000438120 ST20Q9HBF5 79 aa14.21□□□□□ -0.14
PTPRF-209ENST00000438120 A8MXK9 166 aa14.2□□□□□ -0.14
PTPRF-209ENST00000438120 PSPNO60542 156 aa14.2□□□□□ -0.14
PTPRF-209ENST00000438120 CYB5R2Q6BCY4 276 aa14.2□□□□□ -0.14
PTPRF-209ENST00000438120 GREB1Q4ZG55 1949 aa14.2□□□□□ -0.14
PTPRF-209ENST00000438120 LINC00469Q8N7U9 141 aa14.2□□□□□ -0.14
PTPRF-209ENST00000438120 NYNRINQ9P2P1 1898 aaKnown RBP14.2□□□□□ -0.14
PTPRF-209ENST00000438120 ASCL2Q99929 193 aa14.2□□□□□ -0.14
PTPRF-209ENST00000438120 CNOT1A5YKK6 2376 aaKnown RBP14.2□□□□□ -0.14
PTPRF-209ENST00000438120 LILRA1O75019 489 aa14.19□□□□□ -0.14
PTPRF-209ENST00000438120 Q6AWC8 147 aa14.19□□□□□ -0.14
PTPRF-209ENST00000438120 OCC1Q8TAD7 63 aa14.19□□□□□ -0.14
PTPRF-209ENST00000438120 PLSCR4Q9NRQ2 329 aa14.19□□□□□ -0.14
PTPRF-209ENST00000438120 TRAV41A0A0B4J266 112 aa14.19□□□□□ -0.14
PTPRF-209ENST00000438120 TRGV4A0A0C4DH28 118 aa14.19□□□□□ -0.14
PTPRF-209ENST00000438120 GZMBP10144 247 aa14.19□□□□□ -0.14
PTPRF-209ENST00000438120 CD177Q8N6Q3 437 aa14.19□□□□□ -0.14
PTPRF-209ENST00000438120 GREB1LQ9C091 1923 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-209ENST00000438120 NPIPB5A8MRT5 1133 aa14.19□□□□□ -0.14
PTPRF-209ENST00000438120 LY6HO94772 140 aa14.19□□□□□ -0.14
PTPRF-209ENST00000438120 VCX2Q9H322 139 aa14.19□□□□□ -0.14
PTPRF-209ENST00000438120 IGKV2-40A0A087WW87 121 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-209ENST00000438120 A0A0U1RRA0 63 aa14.19□□□□□ -0.14
PTPRF-209ENST00000438120 IGKV2D-40P01614 121 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-209ENST00000438120 SPATA31B1PQ5VZV4 182 aa14.19□□□□□ -0.14
PTPRF-209ENST00000438120 PEF1Q9UBV8 284 aaKnown RBP14.19□□□□□ -0.14
PTPRF-209ENST00000438120 KLF17Q5JT82 389 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-209ENST00000438120 IL18BPO95998 194 aa14.18□□□□□ -0.14
PTPRF-209ENST00000438120 TIMP3P35625 211 aa14.18□□□□□ -0.14
PTPRF-209ENST00000438120 ID3Q02535 119 aa14.18□□□□□ -0.14
PTPRF-209ENST00000438120 FBLN5Q9UBX5 448 aa14.18□□□□□ -0.14
PTPRF-209ENST00000438120 IGHV3-64A0A075B6Q5 118 aa14.18□□□□□ -0.14
PTPRF-209ENST00000438120 LINC00614P0C842 121 aa14.18□□□□□ -0.14
PTPRF-209ENST00000438120 SIGLEC15Q6ZMC9 328 aa14.18□□□□□ -0.14
PTPRF-209ENST00000438120 RNF144BQ7Z419 303 aa14.18□□□□□ -0.14
PTPRF-209ENST00000438120 TRAV21A0A0B4J279 112 aa14.18□□□□□ -0.14
PTPRF-209ENST00000438120 NRN1Q9NPD7 142 aa14.18□□□□□ -0.14
PTPRF-209ENST00000438120 TRAV3A0A0B4J244 114 aa14.18□□□□□ -0.14
PTPRF-209ENST00000438120 TRAV12-3A0A0B4J271 114 aa14.18□□□□□ -0.14
PTPRF-209ENST00000438120 A0A0G2JNJ9 132 aa14.18□□□□□ -0.14
PTPRF-209ENST00000438120 C15orf32Q32M92 178 aa14.18□□□□□ -0.14
PTPRF-209ENST00000438120 NUDT10Q8NFP7 164 aa14.18□□□□□ -0.14
PTPRF-209ENST00000438120 Q9UFV3 132 aa14.18□□□□□ -0.14
PTPRF-209ENST00000438120 IGHV3-73A0A0B4J1V6 119 aa14.17□□□□□ -0.14
PTPRF-209ENST00000438120 A0A1B0GW15 77 aa14.17□□□□□ -0.14
PTPRF-209ENST00000438120 A0A1B0GWB2 263 aa14.17□□□□□ -0.14
PTPRF-209ENST00000438120 IGHV1-8P0DP01 117 aa14.17□□□□□ -0.14
PTPRF-209ENST00000438120 SRRM5B3KS81 715 aa14.17□□□□□ -0.14
PTPRF-209ENST00000438120 IFI27P40305 119 aaPredicted RBP14.17□□□□□ -0.14
PTPRF-209ENST00000438120 ZNF257Q9Y2Q1 563 aa14.17□□□□□ -0.14
PTPRF-209ENST00000438120 WDR90Q96KV7 1748 aa14.17□□□□□ -0.14
PTPRF-209ENST00000438120 A0A087WWC5 75 aa14.17□□□□□ -0.14
PTPRF-209ENST00000438120 SAP30O75446 220 aa14.17□□□□□ -0.14
PTPRF-209ENST00000438120 CLPSP04118 112 aa14.17□□□□□ -0.14
PTPRF-209ENST00000438120 PGPEP1Q9NXJ5 209 aa14.17□□□□□ -0.14
PTPRF-209ENST00000438120 LCTP09848 1927 aa14.17□□□□□ -0.14
PTPRF-209ENST00000438120 NEUROG1Q92886 237 aa14.17□□□□□ -0.14
PTPRF-209ENST00000438120 RPUSD1Q9UJJ7 312 aaKnown RBP14.17□□□□□ -0.14
PTPRF-209ENST00000438120 PMS2P5A8MQ11 134 aa14.16□□□□□ -0.14
PTPRF-209ENST00000438120 NDPQ00604 133 aa14.16□□□□□ -0.14
PTPRF-209ENST00000438120 ZNF415Q09FC8 603 aa14.16□□□□□ -0.14
PTPRF-209ENST00000438120 EXOC3-AS1Q8N2X6 119 aa14.16□□□□□ -0.14
PTPRF-209ENST00000438120 COQ2Q96H96 371 aa14.16□□□□□ -0.14
PTPRF-209ENST00000438120 LINC00205P59089 165 aa14.16□□□□□ -0.14
PTPRF-209ENST00000438120 TREML4Q6UXN2 200 aa14.16□□□□□ -0.14
PTPRF-209ENST00000438120 POLEQ07864 2286 aa14.16□□□□□ -0.14
PTPRF-209ENST00000438120 RIPPLY3P57055 190 aa14.16□□□□□ -0.14
PTPRF-209ENST00000438120 SCN5AQ14524 2016 aa14.16□□□□□ -0.14
PTPRF-209ENST00000438120 TMEM178BH3BS89 294 aa14.15□□□□□ -0.14
PTPRF-209ENST00000438120 MED12Q93074 2177 aa14.15□□□□□ -0.14
PTPRF-209ENST00000438120 IGHV1-3A0A0C4DH29 117 aa14.15□□□□□ -0.14
PTPRF-209ENST00000438120 EFNA4P52798 201 aa14.15□□□□□ -0.14
PTPRF-209ENST00000438120 SCRT1Q9BWW7 348 aa14.15□□□□□ -0.14
PTPRF-209ENST00000438120 ZNF581Q9P0T4 197 aa14.15□□□□□ -0.14
PTPRF-209ENST00000438120 DUSP14O95147 198 aaKnown RBP14.15□□□□□ -0.14
PTPRF-209ENST00000438120 FXYD7P58549 80 aa14.15□□□□□ -0.14
PTPRF-209ENST00000438120 GTSCR1Q86UQ5 136 aa14.15□□□□□ -0.14
PTPRF-209ENST00000438120 MBNL3Q9NUK0 354 aaKnown RBP14.15□□□□□ -0.14
PTPRF-209ENST00000438120 SLC25A15Q9Y619 301 aa14.15□□□□□ -0.14
PTPRF-209ENST00000438120 RFNGQ9Y644 331 aa14.15□□□□□ -0.14
PTPRF-209ENST00000438120 SEPSECSQ9HD40 501 aaKnown RBP14.15□□□□□ -0.14
PTPRF-209ENST00000438120 CACNA1DQ01668 2161 aa14.15□□□□□ -0.14
PTPRF-209ENST00000438120 GAS1P54826 345 aa14.15□□□□□ -0.14
PTPRF-209ENST00000438120 LOC285556D6RIA3 1793 aa14.15□□□□□ -0.15
PTPRF-209ENST00000438120 C11orf68Q9H3H3 251 aaKnown RBP14.14□□□□□ -0.15
PTPRF-209ENST00000438120 A0A1W2PRE2 83 aa14.14□□□□□ -0.15
PTPRF-209ENST00000438120 HGFACQ04756 655 aa14.14□□□□□ -0.15
PTPRF-209ENST00000438120 PRDM13Q9H4Q3 707 aa14.14□□□□□ -0.15
PTPRF-209ENST00000438120 WDR83OSQ9Y284 106 aa14.14□□□□□ -0.15
PTPRF-209ENST00000438120 RALGAPA2Q2PPJ7 1873 aa14.14□□□□□ -0.15
PTPRF-209ENST00000438120 H3BUX3 64 aa14.14□□□□□ -0.15
PTPRF-209ENST00000438120 PSG1P11464 419 aa14.14□□□□□ -0.15
PTPRF-209ENST00000438120 IGHV4-39P01824 125 aa14.14□□□□□ -0.15
PTPRF-209ENST00000438120 CD28P10747 220 aa14.13□□□□□ -0.15
PTPRF-209ENST00000438120 IGFL4Q6B9Z1 124 aa14.13□□□□□ -0.15
PTPRF-209ENST00000438120 SRSF1Q07955 248 aaKnown RBP eCLIP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms