RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 ABCC1P33527 1531 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 A2MP01023 1474 aa2.01□□□□□ -2.09
USP40-204ENST00000427947 SEC16AO15027 2179 aa2□□□□□ -2.09
USP40-204ENST00000427947 SSH2Q76I76 1423 aa2□□□□□ -2.09
USP40-204ENST00000427947 CNTLNQ9NXG0 1405 aa2□□□□□ -2.09
USP40-204ENST00000427947 CACNA1HO95180 2353 aa2□□□□□ -2.09
USP40-204ENST00000427947 SHROOM3Q8TF72 1996 aa2□□□□□ -2.09
USP40-204ENST00000427947 FCGBPQ9Y6R7 5405 aaPredicted RBP2□□□□□ -2.09
USP40-204ENST00000427947 TRAPPC13A5PLN9 417 aa2□□□□□ -2.09
USP40-204ENST00000427947 OR5K4A6NMS3 321 aa2□□□□□ -2.09
USP40-204ENST00000427947 CLDN25C9JDP6 229 aa2□□□□□ -2.09
USP40-204ENST00000427947 CRHP06850 196 aa2□□□□□ -2.09
USP40-204ENST00000427947 RBP1P09455 135 aa2□□□□□ -2.09
USP40-204ENST00000427947 IGHV3-30-3P0DP02 117 aa2□□□□□ -2.09
USP40-204ENST00000427947 CYBAP13498 195 aa2□□□□□ -2.09
USP40-204ENST00000427947 LPAR6P43657 344 aa2□□□□□ -2.09
USP40-204ENST00000427947 RWDD2BP57060 319 aa2□□□□□ -2.09
USP40-204ENST00000427947 TAS2R30P59541 319 aa2□□□□□ -2.09
USP40-204ENST00000427947 TAS2R20P59543 309 aa2□□□□□ -2.09
USP40-204ENST00000427947 HSPE1P61604 102 aaKnown RBP2□□□□□ -2.09
USP40-204ENST00000427947 DEFB115Q30KQ5 88 aa2□□□□□ -2.09
USP40-204ENST00000427947 C12orf74Q32Q52 190 aa2□□□□□ -2.09
USP40-204ENST00000427947 AKR1C8PQ5T2L2 129 aa2□□□□□ -2.09
USP40-204ENST00000427947 WDR59Q6PJI9 974 aa2□□□□□ -2.09
USP40-204ENST00000427947 SDIM1Q6ZPB5 146 aa2□□□□□ -2.09
USP40-204ENST00000427947 MSRB3Q8IXL7 192 aa2□□□□□ -2.09
USP40-204ENST00000427947 EIF4E3Q8N5X7 224 aaKnown RBP2□□□□□ -2.09
USP40-204ENST00000427947 OR11H6Q8NGC7 330 aa2□□□□□ -2.09
USP40-204ENST00000427947 MRPL30Q8TCC3 161 aaKnown RBP2□□□□□ -2.09
USP40-204ENST00000427947 PBDC1Q9BVG4 233 aa2□□□□□ -2.09
USP40-204ENST00000427947 EFCAB1Q9HAE3 211 aa2□□□□□ -2.09
USP40-204ENST00000427947 ASF1BQ9NVP2 202 aa2□□□□□ -2.09
USP40-204ENST00000427947 CYSLTR1Q9Y271 337 aa2□□□□□ -2.09
USP40-204ENST00000427947 ZNF443Q9Y2A4 671 aaPredicted RBP2□□□□□ -2.09
USP40-204ENST00000427947 SYCP2Q9BX26 1530 aa2□□□□□ -2.09
USP40-204ENST00000427947 A2ML1A8K2U0 1454 aa2□□□□□ -2.09
USP40-204ENST00000427947 NCOA2Q15596 1464 aa2□□□□□ -2.09
USP40-204ENST00000427947 SPHKAPQ2M3C7 1700 aa2□□□□□ -2.09
USP40-204ENST00000427947 CLIP1P30622 1438 aa2□□□□□ -2.09
USP40-204ENST00000427947 RTL1A6NKG5 1358 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 CCNB3Q8WWL7 1395 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 PTPRJQ12913 1337 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 NBASA2RRP1 2371 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 FLG2Q5D862 2391 aaPredicted RBP1.99□□□□□ -2.09
USP40-204ENST00000427947 PLXNC1O60486 1568 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 CFAP74Q9C0B2 1584 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 A0A087WUU8 490 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 IGHV3-73A0A0B4J1V6 119 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 LOC102725191A0A1B0GVB3 256 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 DHRS12A0PJE2 317 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 GRIFINA4D1Z8 144 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 C19orf71A6NCJ1 209 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 DPRXA6NFQ7 191 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 GGT3PA6NGU5 568 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 GGTLC3B5MD39 225 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 PPP5D1E7EU14 171 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 TP53I11O14683 189 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 BANF1O75531 89 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 IGHV1-69P01742 117 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 CCL3P10147 92 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 IDO1P14902 403 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 PPIBP23284 216 aaKnown RBP1.99□□□□□ -2.09
USP40-204ENST00000427947 COL8A2P25067 703 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 PHBP35232 272 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 NCALDP61601 193 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 GNG5P63218 68 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 TNFRSF9Q07011 255 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 DHRS2Q13268 280 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 HTR4Q13639 388 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 FAM229BQ4G0N7 80 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 ZNF767PQ75MW2 155 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 ZNF664Q8N3J9 261 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 RPRMLQ8N4K4 120 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 ZNF283Q8N7M2 679 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 CNEP1R1Q8N9A8 125 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 GRPEL2Q8TAA5 225 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 GPR119Q8TDV5 335 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 PYDC1Q8WXC3 89 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 FGF13Q92913 245 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 GPER1Q99527 375 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 MIEN1Q9BRT3 115 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 TMEM222Q9H0R3 208 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 C11orf1Q9H5F2 150 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 C8orf4Q9NR00 106 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 BATF3Q9NR55 127 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 SSR3Q9UNL2 185 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 FUT9Q9Y231 359 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 TRIP11Q15643 1979 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 PLEKHH2Q8IVE3 1493 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 BRWD1Q9NSI6 2320 aa1.99□□□□□ -2.09
USP40-204ENST00000427947 NUP155O75694 1391 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 ROBO3Q96MS0 1386 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 MUC12Q9UKN1 5478 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 ADGRB2O60241 1585 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 ATP7AQ04656 1500 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 HMCN1Q96RW7 5635 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 CDC42BPAQ5VT25 1732 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 SUPT6HQ7KZ85 1726 aaKnown RBP1.98□□□□□ -2.09
USP40-204ENST00000427947 MYO5CQ9NQX4 1742 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 MARF1Q9Y4F3 1742 aaKnown RBP1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms