RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 CLN5O75503 358 aa13.38□□□□□ -0.27
CCDC28B-202ENST00000421922 PPIFP30405 207 aaKnown RBP13.38□□□□□ -0.27
CCDC28B-202ENST00000421922 B2MP61769 119 aa13.38□□□□□ -0.27
CCDC28B-202ENST00000421922 SELENOTP62341 195 aa13.38□□□□□ -0.27
CCDC28B-202ENST00000421922 KLK9Q2XQG4 91 aa13.38□□□□□ -0.27
CCDC28B-202ENST00000421922 ACOT6Q3I5F7 207 aaPredicted RBP13.38□□□□□ -0.27
CCDC28B-202ENST00000421922 MIC13Q5XKP0 118 aa13.38□□□□□ -0.27
CCDC28B-202ENST00000421922 ZNF329Q86UD4 541 aa13.38□□□□□ -0.27
CCDC28B-202ENST00000421922 TRGV9Q99603 122 aa13.38□□□□□ -0.27
CCDC28B-202ENST00000421922 TXN2Q99757 166 aa13.38□□□□□ -0.27
CCDC28B-202ENST00000421922 MRPL36Q9P0J6 103 aaKnown RBP13.38□□□□□ -0.27
CCDC28B-202ENST00000421922 KLK9Q9UKQ9 250 aa13.38□□□□□ -0.27
CCDC28B-202ENST00000421922 TRBV7-1A0A0A6YYK4 115 aa13.37□□□□□ -0.27
CCDC28B-202ENST00000421922 A0A0G2JLM5 398 aa13.37□□□□□ -0.27
CCDC28B-202ENST00000421922 BRI3O95415 125 aa13.37□□□□□ -0.27
CCDC28B-202ENST00000421922 IGHV3-23P01764 117 aa13.37□□□□□ -0.27
CCDC28B-202ENST00000421922 IGHG4P01861 327 aa13.37□□□□□ -0.27
CCDC28B-202ENST00000421922 RPL29P47914 159 aaKnown RBP13.37□□□□□ -0.27
CCDC28B-202ENST00000421922 TMEM41BQ5BJD5 291 aa13.37□□□□□ -0.27
CCDC28B-202ENST00000421922 TEX38Q6PEX7 206 aa13.37□□□□□ -0.27
CCDC28B-202ENST00000421922 Q6ZRG5 221 aa13.37□□□□□ -0.27
CCDC28B-202ENST00000421922 Q6ZSV7 163 aa13.37□□□□□ -0.27
CCDC28B-202ENST00000421922 STPG3Q8N7X2 389 aa13.37□□□□□ -0.27
CCDC28B-202ENST00000421922 BPIFCQ8NFQ6 507 aa13.37□□□□□ -0.27
CCDC28B-202ENST00000421922 FAM213BQ8TBF2 198 aa13.37□□□□□ -0.27
CCDC28B-202ENST00000421922 USMG5Q96IX5 58 aa13.37□□□□□ -0.27
CCDC28B-202ENST00000421922 RFNGQ9Y644 331 aa13.37□□□□□ -0.27
CCDC28B-202ENST00000421922 IGLV1-40P01703 118 aa13.36□□□□□ -0.27
CCDC28B-202ENST00000421922 BLOC1S1P78537 153 aa13.36□□□□□ -0.27
CCDC28B-202ENST00000421922 CFHR3Q02985 330 aa13.36□□□□□ -0.27
CCDC28B-202ENST00000421922 ZNF616Q08AN1 781 aa13.36□□□□□ -0.27
CCDC28B-202ENST00000421922 DPPA3Q6W0C5 159 aa13.36□□□□□ -0.27
CCDC28B-202ENST00000421922 SLC39A9Q9NUM3 307 aa13.36□□□□□ -0.27
CCDC28B-202ENST00000421922 SLC45A2Q9UMX9 530 aa13.36□□□□□ -0.27
CCDC28B-202ENST00000421922 IGKV1OR2-108A0A075B7D4 117 aa13.35□□□□□ -0.27
CCDC28B-202ENST00000421922 OR2T8A6NH00 312 aa13.35□□□□□ -0.27
CCDC28B-202ENST00000421922 NUPL2O15504 423 aaKnown RBP13.35□□□□□ -0.27
CCDC28B-202ENST00000421922 ELANEP08246 267 aa13.35□□□□□ -0.27
CCDC28B-202ENST00000421922 IGLC1P0CG04 106 aa13.35□□□□□ -0.27
CCDC28B-202ENST00000421922 FOXE3Q13461 319 aa13.35□□□□□ -0.27
CCDC28B-202ENST00000421922 COMMD1Q8N668 190 aa13.35□□□□□ -0.27
CCDC28B-202ENST00000421922 ZNF502Q8TBZ5 544 aa13.35□□□□□ -0.27
CCDC28B-202ENST00000421922 GNB4Q9HAV0 340 aa13.35□□□□□ -0.27
CCDC28B-202ENST00000421922 LINC00869P0C866 280 aa13.34□□□□□ -0.27
CCDC28B-202ENST00000421922 M6PRP20645 277 aa13.34□□□□□ -0.27
CCDC28B-202ENST00000421922 FCGR2BP31994 310 aaPredicted RBP13.34□□□□□ -0.27
CCDC28B-202ENST00000421922 GPR183P32249 361 aa13.34□□□□□ -0.27
CCDC28B-202ENST00000421922 RAB9AP51151 201 aa13.34□□□□□ -0.27
CCDC28B-202ENST00000421922 TIGITQ495A1 244 aa13.34□□□□□ -0.27
CCDC28B-202ENST00000421922 CLLU1Q5K131 121 aa13.34□□□□□ -0.27
CCDC28B-202ENST00000421922 OR10G4Q8NGN3 311 aa13.34□□□□□ -0.27
CCDC28B-202ENST00000421922 OR10G9Q8NGN4 311 aa13.34□□□□□ -0.27
CCDC28B-202ENST00000421922 OR10G7Q8NGN6 311 aa13.34□□□□□ -0.27
CCDC28B-202ENST00000421922 PCNPQ8WW12 178 aaKnown RBP13.34□□□□□ -0.27
CCDC28B-202ENST00000421922 SAT2Q96F10 170 aaPredicted RBP13.34□□□□□ -0.27
CCDC28B-202ENST00000421922 IGKV1D-37A0A075B6S9 117 aa13.33□□□□□ -0.28
CCDC28B-202ENST00000421922 A0A1W2PPV4 95 aa13.33□□□□□ -0.28
CCDC28B-202ENST00000421922 TEX46H3BTG2 121 aa13.33□□□□□ -0.28
CCDC28B-202ENST00000421922 COX7A2P2O60397 106 aa13.33□□□□□ -0.28
CCDC28B-202ENST00000421922 RAB2AP61019 212 aa13.33□□□□□ -0.28
CCDC28B-202ENST00000421922 ZNF90Q03938 601 aa13.33□□□□□ -0.28
CCDC28B-202ENST00000421922 CLEC19AQ6UXS0 136 aa13.33□□□□□ -0.28
CCDC28B-202ENST00000421922 OR4X2Q8NGF9 303 aa13.33□□□□□ -0.28
CCDC28B-202ENST00000421922 OR1L4Q8NGR5 311 aa13.33□□□□□ -0.28
CCDC28B-202ENST00000421922 SERTAD4Q9NUC0 356 aa13.33□□□□□ -0.28
CCDC28B-202ENST00000421922 RD3LP0DJH9 198 aa13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 GATA2P23769 480 aaPredicted RBP13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 PSMB8P28062 276 aa13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 PRR20EP86478 221 aa13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 PRR20CP86479 221 aa13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 PRR20DP86480 221 aa13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 PRR20BP86481 221 aa13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 PRR20AP86496 221 aa13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 FAM209BQ5JX69 171 aa13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 FAM122CQ6P4D5 195 aa13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 OR4F5Q8NH21 305 aa13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 ATP6V0BQ99437 205 aa13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 PFDN5Q99471 154 aa13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 ACTR3CQ9C0K3 210 aaPredicted RBP13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 KLK15Q9H2R5 256 aa13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 VSIRQ9H7M9 311 aa13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 RPRMQ9NS64 109 aa13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 FN1P02751 2386 aaKnown RBP13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 ANK3Q12955 4377 aaKnown RBP13.32□□□□□ -0.28
CCDC28B-202ENST00000421922 IGHV3-11P01762 117 aa13.31□□□□□ -0.28
CCDC28B-202ENST00000421922 NMBP08949 121 aa13.31□□□□□ -0.28
CCDC28B-202ENST00000421922 LYZP61626 148 aa13.31□□□□□ -0.28
CCDC28B-202ENST00000421922 RHOBP62745 196 aa13.31□□□□□ -0.28
CCDC28B-202ENST00000421922 SPSB3Q6PJ21 355 aa13.31□□□□□ -0.28
CCDC28B-202ENST00000421922 LCNL1Q6ZST4 164 aa13.31□□□□□ -0.28
CCDC28B-202ENST00000421922 KLHDC1Q8N7A1 406 aa13.31□□□□□ -0.28
CCDC28B-202ENST00000421922 Q8WTZ3 238 aa13.31□□□□□ -0.28
CCDC28B-202ENST00000421922 RNF2Q99496 336 aa13.31□□□□□ -0.28
CCDC28B-202ENST00000421922 C16orf95Q9H693 158 aa13.31□□□□□ -0.28
CCDC28B-202ENST00000421922 PFDN2Q9UHV9 154 aa13.31□□□□□ -0.28
CCDC28B-202ENST00000421922 JMJD1CQ15652 2540 aa13.31□□□□□ -0.28
CCDC28B-202ENST00000421922 TGOLN2O43493 480 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 NDUFA7O95182 113 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 TOMM40O96008 361 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 HBE1P02100 147 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 94.4 ms