RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 IFITM1P13164 125 aa9.8□□□□□ -0.84
VPS13A-205ENST00000376636 APOBEC3AP31941 199 aaPredicted RBP9.8□□□□□ -0.84
VPS13A-205ENST00000376636 NEUROG3Q9Y4Z2 214 aa9.8□□□□□ -0.84
VPS13A-205ENST00000376636 ZNF831Q5JPB2 1677 aa9.8□□□□□ -0.84
VPS13A-205ENST00000376636 IGHV3-23P01764 117 aa9.8□□□□□ -0.84
VPS13A-205ENST00000376636 FGF11Q92914 225 aa9.8□□□□□ -0.84
VPS13A-205ENST00000376636 TRBV20-1A0A075B6N2 111 aa9.8□□□□□ -0.84
VPS13A-205ENST00000376636 CCL1P22362 96 aa9.8□□□□□ -0.84
VPS13A-205ENST00000376636 A0A0J9YW62 118 aa9.8□□□□□ -0.84
VPS13A-205ENST00000376636 RAMP1O60894 148 aa9.8□□□□□ -0.84
VPS13A-205ENST00000376636 ERCC8Q13216 396 aa9.8□□□□□ -0.84
VPS13A-205ENST00000376636 DUSP15Q9H1R2 295 aaPredicted RBP9.8□□□□□ -0.84
VPS13A-205ENST00000376636 MARF1Q9Y4F3 1742 aaKnown RBP9.8□□□□□ -0.84
VPS13A-205ENST00000376636 CD300EQ496F6 205 aaPredicted RBP9.8□□□□□ -0.84
VPS13A-205ENST00000376636 TRAV8-3A0A0A6YYJ7 113 aa9.8□□□□□ -0.84
VPS13A-205ENST00000376636 MYMXA0A1B0GTQ4 84 aa9.8□□□□□ -0.84
VPS13A-205ENST00000376636 IFI6P09912 130 aa9.8□□□□□ -0.84
VPS13A-205ENST00000376636 LHX2P50458 406 aa9.8□□□□□ -0.84
VPS13A-205ENST00000376636 RNF125Q96EQ8 232 aa9.8□□□□□ -0.84
VPS13A-205ENST00000376636 NCR2O95944 276 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 NPC2P61916 151 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 TCTEX1D4Q5JR98 221 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 GFI1BQ5VTD9 330 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 HIST1H2BLQ99880 126 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 UBE2V1Q13404 147 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 TMEM92Q6UXU6 159 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 FAM90A9PA6NNJ1 464 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 SIGLEC15Q6ZMC9 328 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 NEGR1Q7Z3B1 354 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 TCRBV4S1A1TA0A5B7 111 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 ATP5G3P48201 142 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 C1QAP02745 245 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 TMEM144Q7Z5S9 345 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 OR13A1Q8NGR1 328 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 UMODP07911 640 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 CCL4P13236 92 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 UCP1P25874 307 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 C1QL4Q86Z23 238 aa9.79□□□□□ -0.84
VPS13A-205ENST00000376636 HELZP42694 1942 aaKnown RBP9.78□□□□□ -0.84
VPS13A-205ENST00000376636 LOC105371267A0A1B0GV96 52 aa9.78□□□□□ -0.84
VPS13A-205ENST00000376636 NBR2O15453 112 aa9.78□□□□□ -0.84
VPS13A-205ENST00000376636 GUSBP1Q15486 140 aa9.78□□□□□ -0.84
VPS13A-205ENST00000376636 Q6ZT83 130 aa9.78□□□□□ -0.84
VPS13A-205ENST00000376636 FBLIM1Q8WUP2 373 aa9.78□□□□□ -0.84
VPS13A-205ENST00000376636 LINC00312Q9Y6C7 94 aa9.78□□□□□ -0.84
VPS13A-205ENST00000376636 TRAV14DV4A0A0A6YYC5 116 aa9.78□□□□□ -0.84
VPS13A-205ENST00000376636 OR9G9P0C7N8 305 aa9.78□□□□□ -0.84
VPS13A-205ENST00000376636 FAM168AQ92567 244 aa9.78□□□□□ -0.84
VPS13A-205ENST00000376636 C15orf61A6NNL5 157 aa9.78□□□□□ -0.84
VPS13A-205ENST00000376636 OVOL1O14753 267 aa9.78□□□□□ -0.84
VPS13A-205ENST00000376636 IFITM3Q01628 133 aa9.78□□□□□ -0.84
VPS13A-205ENST00000376636 C6orf226Q5I0X4 101 aa9.78□□□□□ -0.84
VPS13A-205ENST00000376636 MIR17HGQ75NE6 70 aa9.78□□□□□ -0.84
VPS13A-205ENST00000376636 NYNRINQ9P2P1 1898 aaKnown RBP9.78□□□□□ -0.84
VPS13A-205ENST00000376636 NEU4Q8WWR8 484 aaPredicted RBP9.77□□□□□ -0.84
VPS13A-205ENST00000376636 DSCR8Q96T75 97 aa9.77□□□□□ -0.84
VPS13A-205ENST00000376636 A0A0U1RRA0 63 aa9.77□□□□□ -0.84
VPS13A-205ENST00000376636 ZAR1Q86SH2 424 aa9.77□□□□□ -0.84
VPS13A-205ENST00000376636 FBXL15Q9H469 300 aa9.77□□□□□ -0.84
VPS13A-205ENST00000376636 NRXN3Q9Y4C0 1643 aa9.77□□□□□ -0.84
VPS13A-205ENST00000376636 TNCP24821 2201 aa9.77□□□□□ -0.84
VPS13A-205ENST00000376636 IQCF6A8MYZ5 107 aa9.77□□□□□ -0.85
VPS13A-205ENST00000376636 NDUFC2O95298 119 aa9.77□□□□□ -0.85
VPS13A-205ENST00000376636 EGR2P11161 476 aaPredicted RBP9.77□□□□□ -0.85
VPS13A-205ENST00000376636 ZNRF1Q8ND25 227 aa9.77□□□□□ -0.85
VPS13A-205ENST00000376636 TM2D1Q9BX74 207 aa9.77□□□□□ -0.85
VPS13A-205ENST00000376636 CACNA1EQ15878 2313 aa9.77□□□□□ -0.85
VPS13A-205ENST00000376636 LOC102723996A0A087X1L8 192 aa9.77□□□□□ -0.85
VPS13A-205ENST00000376636 EFEMP2O95967 443 aa9.77□□□□□ -0.85
VPS13A-205ENST00000376636 FHL5Q5TD97 284 aa9.77□□□□□ -0.85
VPS13A-205ENST00000376636 GLRXP35754 106 aa9.77□□□□□ -0.85
VPS13A-205ENST00000376636 FOXL1Q12952 345 aa9.77□□□□□ -0.85
VPS13A-205ENST00000376636 KIR3DS1Q14943 382 aa9.77□□□□□ -0.85
VPS13A-205ENST00000376636 GP6Q9HCN6 339 aa9.77□□□□□ -0.85
VPS13A-205ENST00000376636 DLEU1O43261 78 aa9.77□□□□□ -0.85
VPS13A-205ENST00000376636 IGKV1D-16P01601 117 aa9.77□□□□□ -0.85
VPS13A-205ENST00000376636 RPRMLQ8N4K4 120 aa9.77□□□□□ -0.85
VPS13A-205ENST00000376636 A0A1W2PPV9 198 aa9.76□□□□□ -0.85
VPS13A-205ENST00000376636 MSGN1A6NI15 193 aa9.76□□□□□ -0.85
VPS13A-205ENST00000376636 TIMM21Q9BVV7 248 aa9.76□□□□□ -0.85
VPS13A-205ENST00000376636 IGLV1-36A0A0B4J1U3 117 aa9.76□□□□□ -0.85
VPS13A-205ENST00000376636 ZXDCQ2QGD7 858 aaPredicted RBP9.76□□□□□ -0.85
VPS13A-205ENST00000376636 RPL36AP83881 106 aaKnown RBP9.76□□□□□ -0.85
VPS13A-205ENST00000376636 SS18Q15532 418 aa9.76□□□□□ -0.85
VPS13A-205ENST00000376636 RPL36ALQ969Q0 106 aaKnown RBP9.76□□□□□ -0.85
VPS13A-205ENST00000376636 WBP1LQ9NX94 342 aa9.76□□□□□ -0.85
VPS13A-205ENST00000376636 TMEM14DPA8MWL7 114 aa9.76□□□□□ -0.85
VPS13A-205ENST00000376636 HEPN1Q6WQI6 88 aa9.76□□□□□ -0.85
VPS13A-205ENST00000376636 SLC25A39Q9BZJ4 359 aaPredicted RBP9.76□□□□□ -0.85
VPS13A-205ENST00000376636 CEACAM8P31997 349 aaPredicted RBP9.76□□□□□ -0.85
VPS13A-205ENST00000376636 SIPA1L3O60292 1781 aaPredicted RBP9.76□□□□□ -0.85
VPS13A-205ENST00000376636 DTX4Q9Y2E6 619 aa9.76□□□□□ -0.85
VPS13A-205ENST00000376636 NRN1LQ496H8 165 aa9.76□□□□□ -0.85
VPS13A-205ENST00000376636 SRD5A1P18405 259 aa9.76□□□□□ -0.85
VPS13A-205ENST00000376636 C8orf46Q8TAG6 207 aa9.75□□□□□ -0.85
VPS13A-205ENST00000376636 A6NNC1 897 aa9.75□□□□□ -0.85
VPS13A-205ENST00000376636 TIMP3P35625 211 aa9.75□□□□□ -0.85
VPS13A-205ENST00000376636 FREM1Q5H8C1 2179 aa9.75□□□□□ -0.85
VPS13A-205ENST00000376636 C9JAW5 83 aa9.75□□□□□ -0.85
VPS13A-205ENST00000376636 PLXNB1O43157 2135 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms