RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ZNF658BQ4V348 819 aaPredicted RBP6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 TRAV14DV4A0A0A6YYC5 116 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 KLK8O60259 260 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 ZNF146Q15072 292 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 HRCT1Q6UXD1 115 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 BCL2L10Q9HD36 194 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 ALS2Q96Q42 1657 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 NUP188Q5SRE5 1749 aa6.39□□□□□ -1.39
LIMCH1-201ENST00000313860 VCYO14598 125 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 EPPINO95925 133 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 VEGFBP49765 207 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 VGLL2Q8N8G2 317 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 CALYQ9NYX4 217 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 A0A0B4J2C4 111 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 SMPXQ9UHP9 88 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 PSPNO60542 156 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 LIFP15018 202 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 GFERP55789 205 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 C9orf47Q6ZRZ4 202 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 ZNF329Q86UD4 541 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 IL23AQ9NPF7 189 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 CARHSP1Q9Y2V2 147 aaKnown RBP6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 FOXF1Q12946 379 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 FAM53BQ14153 422 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 ZNF721Q8TF20 911 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 TEX37Q96LM6 180 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 TRAV4A0A0B4J268 109 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 RAMP1O60894 148 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 DCAF12L2Q5VW00 463 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 NFAM1Q8NET5 270 aaPredicted RBP6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 RNF7Q9UBF6 113 aa6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 COL1A1P02452 1464 aaPredicted RBP6.38□□□□□ -1.39
LIMCH1-201ENST00000313860 PLCH1Q4KWH8 1693 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 TRGV1A0A0A0MS02 117 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 TRAV40A0A0B4J280 105 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 SPRYD7Q5W111 196 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 Q86TA4 180 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 TMEM167AQ8TBQ9 72 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 RCHY1Q96PM5 261 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 A0A1B0GUL6 1792 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 NSUN5P1Q3KNT7 163 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 LINC00596Q86U02 117 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 Q9H3A6 140 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 NOVP48745 357 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 GLRX5Q86SX6 157 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 C20orf197Q8N268 126 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 ZNF491Q8N8L2 437 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 SMRP1Q8NCR6 262 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 X6R8D5 127 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 DUOX1Q9NRD9 1551 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 TRBV24-1A0A075B6N3 115 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 ZNF32P17041 273 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 LIM2P55344 173 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 NMBP08949 121 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 PDLIM4P50479 330 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 C2orf68Q2NKX9 166 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 OTOSQ8NHW6 89 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 MRPL32Q9BYC8 188 aaKnown RBP6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 FOXQ1Q9C009 403 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 ANKRD36CQ5JPF3 1778 aa6.37□□□□□ -1.39
LIMCH1-201ENST00000313860 ETV2O00321 342 aaPredicted RBP6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 RPL35AP18077 110 aaKnown RBP6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 VDAC2P45880 294 aaPredicted RBP6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 WISP1O95388 367 aa6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 IGHV3-11P01762 117 aa6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 NBEAP1P0C6P0 100 aa6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 BSPH1Q075Z2 132 aa6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 EFNB3Q15768 340 aa6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 TMEM256Q8N2U0 113 aa6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 ZNF319Q9P2F9 582 aa6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 ZNF706Q9Y5V0 76 aaPredicted RBP6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 IGLV3-22A0A075B6J6 115 aa6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 COX7B2Q8TF08 81 aa6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 PSG4Q00888 419 aa6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 ZC2HC1BQ5TFG8 222 aa6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 DYNAPQ8N1N2 210 aa6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 CCL13Q99616 98 aa6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 COL1A2P08123 1366 aa6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 KIF1AQ12756 1690 aa6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 FBXL7Q9UJT9 491 aa6.36□□□□□ -1.39
LIMCH1-201ENST00000313860 SMIM27A0A1W2PRY6 76 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 ERVH48-1M5A8F1 160 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 CRYBA2P53672 197 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 RPL18AQ02543 176 aaKnown RBP6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 CROCCQ5TZA2 2017 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 VN1R4Q7Z5H5 301 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 APRG1Q8IVJ8 170 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 RFNGQ9Y644 331 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 FAM222AQ5U5X8 452 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 CLPSL2Q6UWE3 100 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 WFDC10BQ8IUB3 73 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 FKBP2P26885 142 aaKnown RBP6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 Q6ZUT4 128 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 IMMP1LQ96LU5 166 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 UBR1Q8IWV7 1749 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 TRGV11A0A075B6L2 103 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 A0A1W2PPM0 123 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 SH2D6Q7Z4S9 175 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 PDXPQ96GD0 296 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 PSME4Q14997 1843 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms