RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 TRAV5A0A0B4J249 113 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 SCO2A0A1W2PP80 73 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 K7EIM0 57 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 OR7C2O60412 319 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 TSPAN9O75954 239 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 FAM106CPP0CH98 169 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 BPIFB3P59826 476 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 ARPC1AQ92747 370 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 C11orf52Q96A22 123 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 CTDSP1Q9GZU7 261 aa13.16□□□□□ -0.3
CCDC40-201ENST00000269318 Q8N9W7 124 aa13.15□□□□□ -0.3
CCDC40-201ENST00000269318 OR1L6Q8NGR2 347 aa13.15□□□□□ -0.3
CCDC40-201ENST00000269318 Q8WTZ3 238 aa13.15□□□□□ -0.3
CCDC40-201ENST00000269318 UHRF2Q96PU4 802 aa13.15□□□□□ -0.3
CCDC40-201ENST00000269318 ZNF355PQ9NSJ1 428 aa13.15□□□□□ -0.3
CCDC40-201ENST00000269318 SVEP1Q4LDE5 3571 aa13.15□□□□□ -0.3
CCDC40-201ENST00000269318 ELOA3CA0A087WX78 387 aaPredicted RBP13.14□□□□□ -0.31
CCDC40-201ENST00000269318 NPIPB5A8MRT5 1133 aa13.14□□□□□ -0.31
CCDC40-201ENST00000269318 CLDN34H7C241 214 aa13.14□□□□□ -0.31
CCDC40-201ENST00000269318 IGLC1P0CG04 106 aa13.14□□□□□ -0.31
CCDC40-201ENST00000269318 PAX1P15863 534 aa13.14□□□□□ -0.31
CCDC40-201ENST00000269318 NRGNQ92686 78 aa13.14□□□□□ -0.31
CCDC40-201ENST00000269318 SSX3Q99909 188 aa13.14□□□□□ -0.31
CCDC40-201ENST00000269318 GSX1Q9H4S2 264 aaPredicted RBP13.14□□□□□ -0.31
CCDC40-201ENST00000269318 OR10J4P0C629 311 aa13.14□□□□□ -0.31
CCDC40-201ENST00000269318 BRS3P32247 399 aa13.14□□□□□ -0.31
CCDC40-201ENST00000269318 PLP1P60201 277 aa13.14□□□□□ -0.31
CCDC40-201ENST00000269318 OR5AU1Q8NGC0 362 aa13.14□□□□□ -0.31
CCDC40-201ENST00000269318 PERPQ96FX8 193 aa13.14□□□□□ -0.31
CCDC40-201ENST00000269318 PRELID1Q9Y255 219 aa13.14□□□□□ -0.31
CCDC40-201ENST00000269318 URGCP-MRPS24S4R325 110 aa13.14□□□□□ -0.31
CCDC40-201ENST00000269318 UTP20O75691 2785 aaKnown RBP13.13□□□□□ -0.31
CCDC40-201ENST00000269318 TRBV20OR9-2A0A075B6H5 130 aa13.13□□□□□ -0.31
CCDC40-201ENST00000269318 CXCL1P09341 107 aa13.13□□□□□ -0.31
CCDC40-201ENST00000269318 LINC01551Q86U37 167 aa13.13□□□□□ -0.31
CCDC40-201ENST00000269318 TTC9CQ8N5M4 171 aa13.13□□□□□ -0.31
CCDC40-201ENST00000269318 C1RLQ9NZP8 487 aa13.13□□□□□ -0.31
CCDC40-201ENST00000269318 IGHV7-81A0A0B4J1V7 117 aa13.12□□□□□ -0.31
CCDC40-201ENST00000269318 EGR2P11161 476 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-201ENST00000269318 LINC00305Q7Z4B0 112 aa13.12□□□□□ -0.31
CCDC40-201ENST00000269318 FANCD2OSQ96PS1 177 aa13.12□□□□□ -0.31
CCDC40-201ENST00000269318 IGLV11-55A0A075B6I3 123 aa13.12□□□□□ -0.31
CCDC40-201ENST00000269318 A0A1W2PRE2 83 aa13.12□□□□□ -0.31
CCDC40-201ENST00000269318 GGTLC3B5MD39 225 aa13.12□□□□□ -0.31
CCDC40-201ENST00000269318 HLA-DRB1P01911 266 aa13.12□□□□□ -0.31
CCDC40-201ENST00000269318 COX6B1P14854 86 aa13.12□□□□□ -0.31
CCDC40-201ENST00000269318 ORM2P19652 201 aa13.12□□□□□ -0.31
CCDC40-201ENST00000269318 KLF17Q5JT82 389 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-201ENST00000269318 C16orf82Q7Z2V1 217 aa13.12□□□□□ -0.31
CCDC40-201ENST00000269318 OR1B1Q8NGR6 318 aa13.12□□□□□ -0.31
CCDC40-201ENST00000269318 EPG5Q9HCE0 2579 aa13.11□□□□□ -0.31
CCDC40-201ENST00000269318 TGIF2-C20orf24A0A0A6YYL0 155 aa13.11□□□□□ -0.31
CCDC40-201ENST00000269318 IGKV1-17P01599 117 aa13.11□□□□□ -0.31
CCDC40-201ENST00000269318 UBE2L3P68036 154 aaKnown RBP13.11□□□□□ -0.31
CCDC40-201ENST00000269318 ZFP82Q8N141 532 aa13.11□□□□□ -0.31
CCDC40-201ENST00000269318 IGHV1-69DA0A0B4J2H0 117 aa13.11□□□□□ -0.31
CCDC40-201ENST00000269318 C1orf196B1AJZ1 125 aa13.11□□□□□ -0.31
CCDC40-201ENST00000269318 HYPMO75409 117 aa13.11□□□□□ -0.31
CCDC40-201ENST00000269318 IGHV1-69P01742 117 aa13.11□□□□□ -0.31
CCDC40-201ENST00000269318 PYYP10082 97 aa13.11□□□□□ -0.31
CCDC40-201ENST00000269318 PSG1P11464 419 aa13.11□□□□□ -0.31
CCDC40-201ENST00000269318 RAB5BP61020 215 aa13.11□□□□□ -0.31
CCDC40-201ENST00000269318 RBM14Q96PK6 669 aaKnown RBP13.11□□□□□ -0.31
CCDC40-201ENST00000269318 PAXXQ9BUH6 204 aa13.11□□□□□ -0.31
CCDC40-201ENST00000269318 OR51M1Q9H341 326 aa13.11□□□□□ -0.31
CCDC40-201ENST00000269318 DSCR9P59020 149 aa13.1□□□□□ -0.31
CCDC40-201ENST00000269318 TIGITQ495A1 244 aa13.1□□□□□ -0.31
CCDC40-201ENST00000269318 C1QL4Q86Z23 238 aa13.1□□□□□ -0.31
CCDC40-201ENST00000269318 FXYD5Q96DB9 178 aa13.1□□□□□ -0.31
CCDC40-201ENST00000269318 ANAPC16Q96DE5 110 aa13.1□□□□□ -0.31
CCDC40-201ENST00000269318 HSPB9Q9BQS6 159 aa13.1□□□□□ -0.31
CCDC40-201ENST00000269318 A1L4Q6 167 aa13.09□□□□□ -0.31
CCDC40-201ENST00000269318 PGPEP1LA6NFU8 196 aa13.09□□□□□ -0.31
CCDC40-201ENST00000269318 C2CD4CQ8TF44 421 aa13.09□□□□□ -0.31
CCDC40-201ENST00000269318 RASL11BQ9BPW5 248 aa13.09□□□□□ -0.31
CCDC40-201ENST00000269318 CSMD1Q96PZ7 3565 aa13.09□□□□□ -0.31
CCDC40-201ENST00000269318 CRYBG3Q68DQ2 2970 aa13.09□□□□□ -0.31
CCDC40-201ENST00000269318 IGHV3OR16-10A0A075B7F0 116 aa13.09□□□□□ -0.31
CCDC40-201ENST00000269318 PFN1P07737 140 aaKnown RBP13.09□□□□□ -0.31
CCDC40-201ENST00000269318 MSMBP08118 114 aa13.09□□□□□ -0.31
CCDC40-201ENST00000269318 AURKAIP1Q9NWT8 199 aaPredicted RBP13.09□□□□□ -0.31
CCDC40-201ENST00000269318 TRBV24-1A0A075B6N3 115 aa13.08□□□□□ -0.32
CCDC40-201ENST00000269318 TRAV40A0A0B4J280 105 aa13.08□□□□□ -0.32
CCDC40-201ENST00000269318 C9JCJ5 164 aa13.08□□□□□ -0.32
CCDC40-201ENST00000269318 H7BYZ3 331 aa13.08□□□□□ -0.32
CCDC40-201ENST00000269318 CD99P14209 185 aa13.08□□□□□ -0.32
CCDC40-201ENST00000269318 CRYBB3P26998 211 aa13.08□□□□□ -0.32
CCDC40-201ENST00000269318 RPL35P42766 123 aaKnown RBP13.08□□□□□ -0.32
CCDC40-201ENST00000269318 SUMO1P63165 101 aaKnown RBP13.08□□□□□ -0.32
CCDC40-201ENST00000269318 STXBP6Q8NFX7 210 aa13.08□□□□□ -0.32
CCDC40-201ENST00000269318 ZNF48Q96MX3 618 aaPredicted RBP13.08□□□□□ -0.32
CCDC40-201ENST00000269318 FBN2P35556 2912 aa13.07□□□□□ -0.32
CCDC40-201ENST00000269318 OR5T1Q8NG75 326 aa13.07□□□□□ -0.32
CCDC40-201ENST00000269318 OCC1Q8TAD7 63 aa13.07□□□□□ -0.32
CCDC40-201ENST00000269318 ELOVL1Q9BW60 279 aa13.07□□□□□ -0.32
CCDC40-201ENST00000269318 SPG11Q96JI7 2443 aa13.07□□□□□ -0.32
CCDC40-201ENST00000269318 F8W735 103 aaPredicted RBP13.07□□□□□ -0.32
CCDC40-201ENST00000269318 RD3LP0DJH9 198 aa13.07□□□□□ -0.32
CCDC40-201ENST00000269318 RPS10P46783 165 aaKnown RBP13.07□□□□□ -0.32
CCDC40-201ENST00000269318 BRD3OSQ6XYD6 125 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms