RNA–Protein interactions for RNA: ENST00000263388.6

NOTCH3-201, Transcript of notch 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOTCH3, Length 8,666 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-201ENST00000263388 RAMP1O60894 148 aa14.66□□□□□ -0.06
NOTCH3-201ENST00000263388 SAA1P0DJI8 122 aaPredicted RBP14.66□□□□□ -0.06
NOTCH3-201ENST00000263388 GAGE2BQ13066 116 aa14.66□□□□□ -0.06
NOTCH3-201ENST00000263388 GAGE2EQ4V326 116 aa14.66□□□□□ -0.06
NOTCH3-201ENST00000263388 ORMDL2Q53FV1 153 aa14.66□□□□□ -0.06
NOTCH3-201ENST00000263388 PPP1R32Q7Z5V6 425 aa14.66□□□□□ -0.06
NOTCH3-201ENST00000263388 FAM168AQ92567 244 aa14.66□□□□□ -0.06
NOTCH3-201ENST00000263388 GAGE2DQ9UEU5 116 aa14.66□□□□□ -0.06
NOTCH3-201ENST00000263388 IGHV3-66A0A0C4DH42 116 aa14.66□□□□□ -0.06
NOTCH3-201ENST00000263388 ST6GALNAC3Q8NDV1 305 aa14.66□□□□□ -0.06
NOTCH3-201ENST00000263388 ITLN2Q8WWU7 325 aaPredicted RBP14.65□□□□□ -0.06
NOTCH3-201ENST00000263388 RNASE7Q9H1E1 156 aaKnown RBP14.65□□□□□ -0.06
NOTCH3-201ENST00000263388 FABP5P3A8MUU1 101 aa14.65□□□□□ -0.06
NOTCH3-201ENST00000263388 M0R2P5 195 aa14.65□□□□□ -0.06
NOTCH3-201ENST00000263388 SNAI2O43623 268 aa14.65□□□□□ -0.06
NOTCH3-201ENST00000263388 IGHV3-23P01764 117 aa14.65□□□□□ -0.06
NOTCH3-201ENST00000263388 ERVK11-1P61568 191 aa14.65□□□□□ -0.06
NOTCH3-201ENST00000263388 TMEM170AQ8WVE7 144 aa14.65□□□□□ -0.06
NOTCH3-201ENST00000263388 PEMTQ9UBM1 199 aa14.65□□□□□ -0.06
NOTCH3-201ENST00000263388 RPL23P62829 140 aaKnown RBP14.65□□□□□ -0.06
NOTCH3-201ENST00000263388 CHCHD1Q96BP2 118 aaKnown RBP14.65□□□□□ -0.06
NOTCH3-201ENST00000263388 NHP2Q9NX24 153 aaKnown RBP14.65□□□□□ -0.06
NOTCH3-201ENST00000263388 LINC00114Q6XXX2 140 aa14.65□□□□□ -0.06
NOTCH3-201ENST00000263388 NRN1Q9NPD7 142 aa14.65□□□□□ -0.06
NOTCH3-201ENST00000263388 EFEMP2O95967 443 aa14.65□□□□□ -0.06
NOTCH3-201ENST00000263388 SPG11Q96JI7 2443 aa14.65□□□□□ -0.06
NOTCH3-201ENST00000263388 F2Z2F3 143 aa14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 RAMP3O60896 148 aa14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 ATP5G3P48201 142 aa14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 GTF3AQ92664 365 aaKnown RBP14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 RFPL3SP0C7P2 107 aa14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 SAMD5Q5TGI4 173 aa14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 ZNF525Q8N782 197 aa14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 SERF1AO75920 110 aa14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 ZNF883P0CG24 379 aa14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 RIPPLY3P57055 190 aa14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 IGHV3-49A0A0A0MS15 119 aa14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 ST6GALNAC6Q969X2 333 aa14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 SLC50A1Q9BRV3 221 aa14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 SP9P0CG40 484 aa14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 PVRIGQ6DKI7 326 aa14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 MRPL20Q9BYC9 149 aaKnown RBP14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 ST20Q9HBF5 79 aa14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 ORAOV1Q8WV07 137 aa14.64□□□□□ -0.07
NOTCH3-201ENST00000263388 MORN3Q6PF18 240 aaPredicted RBP14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 MIR17HGQ75NE6 70 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 FAM89BQ8N5H3 189 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 TRBV6-7A0A0A0MS04 114 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 TRAV14DV4A0A0A6YYC5 116 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 TMEM238C9JI98 176 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 SAA2-SAA4A0A096LPE2 208 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 NBR2O15453 112 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 SAA2P0DJI9 122 aaPredicted RBP14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 TRGV2A0A075B6R0 118 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 NAPSAO96009 420 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 DSCAML1Q8TD84 2053 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 TCRBV4S1A1TA0A5B7 111 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 HBDP02042 147 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 LINC00271P0C7V0 271 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 PSG7Q13046 419 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 CLEC19AQ6UXS0 136 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 SIGLEC12Q96PQ1 595 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 LINC01587Q99440 93 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 VGLL1Q99990 258 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 DTX1Q86Y01 620 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 SORL1Q92673 2214 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 IGHV3OR16-13A0A075B7E8 117 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 IGHV3-74A0A0B4J1X5 117 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 RNF222A6NCQ9 220 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 OSTCQ9NRP0 149 aa14.63□□□□□ -0.07
NOTCH3-201ENST00000263388 ATP5L2Q7Z4Y8 100 aa14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 RNF126Q9BV68 326 aa14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 TRAV9-2A0A087WT02 112 aa14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 ADMP35318 185 aa14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 OR13A1Q8NGR1 328 aa14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 LINC00587B1AMM8 73 aa14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 CD7P09564 240 aa14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 LDLRAD2Q5SZI1 272 aa14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 DSCAMO60469 2012 aa14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 ARHGAP32A7KAX9 2087 aa14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 F8VVB4 439 aa14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 F8VWA3 439 aa14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 TMEM242Q9NWH2 141 aa14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 TMEM167AQ8TBQ9 72 aa14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 VKORC1Q9BQB6 163 aa14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 CST9LQ9H4G1 147 aa14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 SEPSECSQ9HD40 501 aaKnown RBP14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 UBE2CO00762 179 aa14.62□□□□□ -0.07
NOTCH3-201ENST00000263388 NDUFAF3Q9BU61 184 aa14.61□□□□□ -0.07
NOTCH3-201ENST00000263388 LOC105371267A0A1B0GV96 52 aa14.61□□□□□ -0.07
NOTCH3-201ENST00000263388 DPH3P1Q9H4G8 78 aa14.61□□□□□ -0.07
NOTCH3-201ENST00000263388 C17orf100A8MU93 164 aa14.61□□□□□ -0.07
NOTCH3-201ENST00000263388 SHISA3A0PJX4 238 aa14.61□□□□□ -0.07
NOTCH3-201ENST00000263388 ZXDCQ2QGD7 858 aaPredicted RBP14.61□□□□□ -0.07
NOTCH3-201ENST00000263388 MORN2Q502X0 79 aa14.61□□□□□ -0.07
NOTCH3-201ENST00000263388 A0A1B0GTI1 187 aa14.61□□□□□ -0.07
NOTCH3-201ENST00000263388 IGHV1-2P23083 117 aa14.6□□□□□ -0.07
NOTCH3-201ENST00000263388 HSD52Q0P140 79 aa14.6□□□□□ -0.07
NOTCH3-201ENST00000263388 SRSF7Q16629 238 aaKnown RBP eCLIP14.6□□□□□ -0.07
NOTCH3-201ENST00000263388 SPRED2Q7Z698 418 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms