RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 PRCDQ00LT1 54 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 SPATA45Q537H7 98 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 OR1B1Q8NGR6 318 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 FLYWCH2Q96CP2 140 aaKnown RBP10.31□□□□□ -0.76
LIG1-201ENST00000263274 SSUH2Q9Y2M2 353 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 AMMECR1Q9Y4X0 333 aaPredicted RBP10.31□□□□□ -0.76
LIG1-201ENST00000263274 RNF114Q9Y508 228 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 NKX6-3A6NJ46 265 aa10.3□□□□□ -0.76
LIG1-201ENST00000263274 SLC25A17O43808 307 aa10.3□□□□□ -0.76
LIG1-201ENST00000263274 CDKN1BP46527 198 aa10.3□□□□□ -0.76
LIG1-201ENST00000263274 SELENOTP62341 195 aa10.3□□□□□ -0.76
LIG1-201ENST00000263274 DIAPH2-AS1Q14236 149 aa10.3□□□□□ -0.76
LIG1-201ENST00000263274 LCN12Q6JVE5 192 aa10.3□□□□□ -0.76
LIG1-201ENST00000263274 C22orf34Q6ZV56 151 aa10.3□□□□□ -0.76
LIG1-201ENST00000263274 NEUROG1Q92886 237 aa10.3□□□□□ -0.76
LIG1-201ENST00000263274 C20orf144Q9BQM9 153 aa10.3□□□□□ -0.76
LIG1-201ENST00000263274 PAXXQ9BUH6 204 aa10.3□□□□□ -0.76
LIG1-201ENST00000263274 MALRD1Q5VYJ5 2156 aa10.3□□□□□ -0.76
LIG1-201ENST00000263274 SLC25A5P05141 298 aaKnown RBP10.3□□□□□ -0.76
LIG1-201ENST00000263274 LINC00310P59036 64 aa10.3□□□□□ -0.76
LIG1-201ENST00000263274 TPTE2P1Q5T6R2 138 aa10.3□□□□□ -0.76
LIG1-201ENST00000263274 C10orf113Q5VZT2 155 aa10.3□□□□□ -0.76
LIG1-201ENST00000263274 OR2D3Q8NGH3 330 aa10.3□□□□□ -0.76
LIG1-201ENST00000263274 OR1L8Q8NGR8 309 aa10.3□□□□□ -0.76
LIG1-201ENST00000263274 SAP30LQ9HAJ7 183 aa10.3□□□□□ -0.76
LIG1-201ENST00000263274 DYSFO75923 2080 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 C9JCJ5 164 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 E7EUB6 86 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 Q56UQ5 140 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 TIMM23BQ5SRD1 257 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 SEM1Q6ZVN7 128 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 OR5B3Q8NH48 314 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 GAFA1Q96PS6 74 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 AKAP13Q12802 2813 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 GPX1P07203 203 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 CD69Q07108 199 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 TMEM249Q2WGJ8 235 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 C19orf35Q6ZS72 473 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 ZNF738Q8NE65 137 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 ZNF503Q96F45 646 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 SLC25A33Q9BSK2 321 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 CLEC5AQ9NY25 188 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 LAMTOR2Q9Y2Q5 125 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 VSTM5A8MXK1 200 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 CX3CL1P78423 397 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 PLA2G2CQ5R387 149 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 ZNF835Q9Y2P0 537 aa10.29□□□□□ -0.76
LIG1-201ENST00000263274 ATRXP46100 2492 aa10.28□□□□□ -0.76
LIG1-201ENST00000263274 RNASE2P10153 161 aaKnown RBP10.28□□□□□ -0.76
LIG1-201ENST00000263274 CD24P25063 80 aa10.28□□□□□ -0.76
LIG1-201ENST00000263274 ZNF137PP52743 207 aa10.28□□□□□ -0.76
LIG1-201ENST00000263274 RPUSD1Q9UJJ7 312 aaKnown RBP10.28□□□□□ -0.76
LIG1-201ENST00000263274 CDC42EP3Q9UKI2 254 aa10.28□□□□□ -0.76
LIG1-201ENST00000263274 AMY1AP04745 511 aa10.28□□□□□ -0.76
LIG1-201ENST00000263274 FOXA3P55318 350 aaPredicted RBP10.28□□□□□ -0.76
LIG1-201ENST00000263274 GUSBP1Q15486 140 aa10.28□□□□□ -0.76
LIG1-201ENST00000263274 LDLRAD2Q5SZI1 272 aa10.28□□□□□ -0.76
LIG1-201ENST00000263274 NUDT10Q8NFP7 164 aa10.28□□□□□ -0.76
LIG1-201ENST00000263274 GNB1LQ9BYB4 327 aa10.28□□□□□ -0.76
LIG1-201ENST00000263274 PGPA6NDG6 321 aa10.28□□□□□ -0.76
LIG1-201ENST00000263274 NDUFB8O95169 186 aa10.28□□□□□ -0.76
LIG1-201ENST00000263274 UBE2V1Q13404 147 aa10.28□□□□□ -0.76
LIG1-201ENST00000263274 ZNF439Q8NDP4 499 aa10.28□□□□□ -0.76
LIG1-201ENST00000263274 A0A1W2PS18 150 aa10.27□□□□□ -0.77
LIG1-201ENST00000263274 BMPR1BO00238 502 aa10.27□□□□□ -0.77
LIG1-201ENST00000263274 NHLH1Q02575 133 aa10.27□□□□□ -0.77
LIG1-201ENST00000263274 TMEM136Q6ZRR5 245 aa10.27□□□□□ -0.77
LIG1-201ENST00000263274 C11orf52Q96A22 123 aa10.27□□□□□ -0.77
LIG1-201ENST00000263274 OSTCQ9NRP0 149 aa10.27□□□□□ -0.77
LIG1-201ENST00000263274 M0R2Z0 102 aa10.27□□□□□ -0.77
LIG1-201ENST00000263274 CORTO00230 105 aa10.27□□□□□ -0.77
LIG1-201ENST00000263274 SLAQ13239 276 aa10.27□□□□□ -0.77
LIG1-201ENST00000263274 ZNF714Q96N38 554 aa10.27□□□□□ -0.77
LIG1-201ENST00000263274 SFXN3Q9BWM7 321 aa10.27□□□□□ -0.77
LIG1-201ENST00000263274 GSX1Q9H4S2 264 aaPredicted RBP10.27□□□□□ -0.77
LIG1-201ENST00000263274 A0A1W2PN81 502 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 DPRXA6NFQ7 191 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 ISLRO14498 428 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 HLA-DQA1P01909 254 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 MT-ND6P03923 174 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 CD40P25942 277 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 TEX43Q6ZNM6 134 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 LINC00305Q7Z4B0 112 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.26□□□□□ -0.77
LIG1-201ENST00000263274 ZNF596Q8TC21 504 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 ZFYVE26Q68DK2 2539 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 RELNP78509 3460 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 SMG1Q96Q15 3661 aaKnown RBP10.26□□□□□ -0.77
LIG1-201ENST00000263274 C3orf79P0CE67 100 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 CGB3P0DN86 165 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 CGB7P0DN87 165 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 PMCHL1Q16048 86 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 TCF24Q7RTU0 167 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 DYNLRB1Q9NP97 96 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 UQCR10Q9UDW1 63 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 ZNF324O75467 553 aaPredicted RBP10.26□□□□□ -0.77
LIG1-201ENST00000263274 LHBP01229 141 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 TNFRSF1AP19438 455 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 PPOXP50336 477 aa10.26□□□□□ -0.77
LIG1-201ENST00000263274 SUB1P53999 127 aaKnown RBP eCLIP10.26□□□□□ -0.771e-16■■■■■ 45.6
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms