RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 LSM10Q969L4 123 aaKnown RBP10.19□□□□□ -0.78
CLN3-249ENST00000636685 MISP3Q96FF7 219 aa10.19□□□□□ -0.78
CLN3-249ENST00000636685 ZFAND3Q9H8U3 227 aa10.19□□□□□ -0.78
CLN3-249ENST00000636685 RAB22AQ9UL26 194 aa10.19□□□□□ -0.78
CLN3-249ENST00000636685 LINC00588Q9Y4M8 146 aa10.19□□□□□ -0.78
CLN3-249ENST00000636685 SMIM9A6NGZ8 99 aa10.18□□□□□ -0.78
CLN3-249ENST00000636685 SULT1C2O00338 296 aa10.18□□□□□ -0.78
CLN3-249ENST00000636685 GNG7O60262 68 aa10.18□□□□□ -0.78
CLN3-249ENST00000636685 NUTF2P61970 127 aaKnown RBP10.18□□□□□ -0.78
CLN3-249ENST00000636685 TXN2Q99757 166 aa10.18□□□□□ -0.78
CLN3-249ENST00000636685 TMEM231Q9H6L2 316 aa10.18□□□□□ -0.78
CLN3-249ENST00000636685 CCL28Q9NRJ3 127 aa10.18□□□□□ -0.78
CLN3-249ENST00000636685 PUS1Q9Y606 427 aaKnown RBP eCLIP10.18□□□□□ -0.78
CLN3-249ENST00000636685 RBFOX2O43251 390 aaKnown RBP eCLIP10.17□□□□□ -0.78
CLN3-249ENST00000636685 HPRT1P00492 218 aa10.17□□□□□ -0.78
CLN3-249ENST00000636685 FGF2P09038 288 aa10.17□□□□□ -0.78
CLN3-249ENST00000636685 CTXN2P0C2S0 81 aa10.17□□□□□ -0.78
CLN3-249ENST00000636685 ETV6P41212 452 aa10.17□□□□□ -0.78
CLN3-249ENST00000636685 NSG2Q9Y328 171 aa10.17□□□□□ -0.78
CLN3-249ENST00000636685 A0A1B0GU03 582 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 TRDV1A0A1B0GX56 115 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 RPS10-NUDT3A0A1W2PQS6 291 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 H3BMM0 161 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 NUDT3O95989 172 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 MT-CO2P00403 227 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 DTYMKP23919 212 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 TGFBR1P36897 503 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 P2RY1P47900 373 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 FXYD7P58549 80 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 DAD1P61803 113 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 DHRS2Q13268 280 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 TRIM16LQ309B1 348 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 HES5Q5TA89 166 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 GSG1LQ6UXU4 331 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 OR1P1Q8NH06 330 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 SECTM1Q8WVN6 248 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 C17orf77Q96MU5 243 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 TXNL4BQ9NX01 149 aaKnown RBP10.16□□□□□ -0.78
CLN3-249ENST00000636685 DAPK2Q9UIK4 370 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 YTHDF2Q9Y5A9 579 aaKnown RBP10.16□□□□□ -0.78
CLN3-249ENST00000636685 OR51B2Q9Y5P1 312 aa10.16□□□□□ -0.78
CLN3-249ENST00000636685 HELTA6NFD8 242 aa10.15□□□□□ -0.78
CLN3-249ENST00000636685 NPPCP23582 126 aa10.15□□□□□ -0.78
CLN3-249ENST00000636685 RPS19P39019 145 aaKnown RBP10.15□□□□□ -0.78
CLN3-249ENST00000636685 CCL18P55774 89 aa10.15□□□□□ -0.78
CLN3-249ENST00000636685 TRAM1Q15629 374 aa10.15□□□□□ -0.78
CLN3-249ENST00000636685 SPANXN2Q5MJ10 180 aa10.15□□□□□ -0.78
CLN3-249ENST00000636685 MOB3AQ96BX8 217 aa10.15□□□□□ -0.78
CLN3-249ENST00000636685 ZNF503Q96F45 646 aa10.15□□□□□ -0.78
CLN3-249ENST00000636685 A0A1W2PS18 150 aa10.14□□□□□ -0.79
CLN3-249ENST00000636685 UPK1BO75841 260 aa10.14□□□□□ -0.79
CLN3-249ENST00000636685 CNIH2Q6PI25 160 aa10.14□□□□□ -0.79
CLN3-249ENST00000636685 ZNF600Q6ZNG1 722 aa10.14□□□□□ -0.79
CLN3-249ENST00000636685 CCDC190Q86UF4 302 aa10.14□□□□□ -0.79
CLN3-249ENST00000636685 TMEM203Q969S6 136 aa10.14□□□□□ -0.79
CLN3-249ENST00000636685 PINX1Q96BK5 328 aaKnown RBP10.14□□□□□ -0.79
CLN3-249ENST00000636685 Q9H8V8 135 aa10.14□□□□□ -0.79
CLN3-249ENST00000636685 PLEKHA2Q9HB19 425 aa10.14□□□□□ -0.79
CLN3-249ENST00000636685 hCG_2014768A0A024R1R8 64 aa10.13□□□□□ -0.79
CLN3-249ENST00000636685 LOC102723971A0A1B0GUV8 181 aa10.13□□□□□ -0.79
CLN3-249ENST00000636685 DEFA1P59665 94 aa10.13□□□□□ -0.79
CLN3-249ENST00000636685 DEFA3P59666 94 aa10.13□□□□□ -0.79
CLN3-249ENST00000636685 KRTAP10-1P60331 282 aa10.13□□□□□ -0.79
CLN3-249ENST00000636685 SERTAD4-AS1Q5TG53 156 aa10.13□□□□□ -0.79
CLN3-249ENST00000636685 TMEM91Q6ZNR0 172 aa10.13□□□□□ -0.79
CLN3-249ENST00000636685 Q6ZSN1 163 aa10.13□□□□□ -0.79
CLN3-249ENST00000636685 OR51H1Q8NH63 302 aa10.13□□□□□ -0.79
CLN3-249ENST00000636685 AP3S1Q92572 193 aa10.13□□□□□ -0.79
CLN3-249ENST00000636685 CCDC32Q9BV29 185 aa10.13□□□□□ -0.79
CLN3-249ENST00000636685 PGPEP1Q9NXJ5 209 aa10.13□□□□□ -0.79
CLN3-249ENST00000636685 LRP1Q07954 4544 aaKnown RBP10.13□□□□□ -0.79
CLN3-249ENST00000636685 DBX1A6NMT0 343 aa10.12□□□□□ -0.79
CLN3-249ENST00000636685 FAM229AH3BQW9 127 aa10.12□□□□□ -0.79
CLN3-249ENST00000636685 IGKV3-20P01619 116 aa10.12□□□□□ -0.79
CLN3-249ENST00000636685 CRYBB3P26998 211 aa10.12□□□□□ -0.79
CLN3-249ENST00000636685 TNFSF8P32971 234 aa10.12□□□□□ -0.79
CLN3-249ENST00000636685 BCAP31P51572 246 aa10.12□□□□□ -0.79
CLN3-249ENST00000636685 ERVK-16P61578 105 aa10.12□□□□□ -0.79
CLN3-249ENST00000636685 CATR1Q13166 79 aa10.12□□□□□ -0.79
CLN3-249ENST00000636685 TTC32Q5I0X7 151 aa10.12□□□□□ -0.79
CLN3-249ENST00000636685 C22orf42Q6IC83 251 aa10.12□□□□□ -0.79
CLN3-249ENST00000636685 MZT2AQ6P582 158 aa10.12□□□□□ -0.79
CLN3-249ENST00000636685 SSX7Q7RTT5 188 aa10.12□□□□□ -0.79
CLN3-249ENST00000636685 TMEM56Q96MV1 263 aa10.12□□□□□ -0.79
CLN3-249ENST00000636685 METTL26Q96S19 204 aa10.12□□□□□ -0.79
CLN3-249ENST00000636685 COMMD9Q9P000 198 aa10.12□□□□□ -0.79
CLN3-249ENST00000636685 V9GY05 133 aa10.12□□□□□ -0.79
CLN3-249ENST00000636685 MARCH11A6NNE9 402 aa10.11□□□□□ -0.79
CLN3-249ENST00000636685 CTDSP2O14595 271 aa10.11□□□□□ -0.79
CLN3-249ENST00000636685 PTHLHP12272 177 aa10.11□□□□□ -0.79
CLN3-249ENST00000636685 HLA-DRB4P13762 266 aa10.11□□□□□ -0.79
CLN3-249ENST00000636685 GNRHRP30968 328 aa10.11□□□□□ -0.79
CLN3-249ENST00000636685 DEFB1P60022 68 aa10.11□□□□□ -0.79
CLN3-249ENST00000636685 RPS25P62851 125 aaKnown RBP10.11□□□□□ -0.79
CLN3-249ENST00000636685 HAMPP81172 84 aa10.11□□□□□ -0.79
CLN3-249ENST00000636685 IFITM3Q01628 133 aa10.11□□□□□ -0.79
CLN3-249ENST00000636685 MSMO1Q15800 293 aa10.11□□□□□ -0.79
CLN3-249ENST00000636685 CDNFQ49AH0 187 aa10.11□□□□□ -0.79
CLN3-249ENST00000636685 LYSMD2Q8IV50 215 aa10.11□□□□□ -0.79
CLN3-249ENST00000636685 SYT8Q8NBV8 401 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms