RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 AGPAT2O15120 278 aa11.18□□□□□ -0.62
USP39-220ENST00000613444 SRP14P37108 136 aaKnown RBP11.18□□□□□ -0.62
USP39-220ENST00000613444 NDUFA5Q16718 116 aa11.18□□□□□ -0.62
USP39-220ENST00000613444 TMEM116Q8NCL8 245 aa11.18□□□□□ -0.62
USP39-220ENST00000613444 NPIPB3Q92617 1050 aa11.18□□□□□ -0.62
USP39-220ENST00000613444 ACY3Q96HD9 319 aa11.18□□□□□ -0.62
USP39-220ENST00000613444 RPRMQ9NS64 109 aa11.18□□□□□ -0.62
USP39-220ENST00000613444 TNFRSF19Q9NS68 423 aa11.18□□□□□ -0.62
USP39-220ENST00000613444 HIVEP2P31629 2446 aa11.18□□□□□ -0.62
USP39-220ENST00000613444 BTBD17A6NE02 478 aa11.18□□□□□ -0.62
USP39-220ENST00000613444 SOX15O60248 233 aa11.18□□□□□ -0.62
USP39-220ENST00000613444 LY6G6DO95868 133 aa11.18□□□□□ -0.62
USP39-220ENST00000613444 CAMLGP49069 296 aa11.18□□□□□ -0.62
USP39-220ENST00000613444 ETFRF1Q6IPR1 90 aa11.18□□□□□ -0.62
USP39-220ENST00000613444 THAP8Q8NA92 274 aa11.18□□□□□ -0.62
USP39-220ENST00000613444 RND2P52198 227 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 C9orf152Q5JTZ5 239 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 AKR1C8PQ5T2L2 129 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 PXDC1Q5TGL8 231 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 Q6ZRG5 221 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 SLC35E3Q7Z769 313 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 LYPD6BQ8NI32 183 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 LINC00527Q9UJ94 153 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 SLC45A2Q9UMX9 530 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 SETXQ7Z333 2677 aaKnown RBP11.17□□□□□ -0.62
USP39-220ENST00000613444 TRAV41A0A0B4J266 112 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 C17orf112F2Z3M2 114 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 YIF1AO95070 293 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 ELLP55199 621 aaPredicted RBP11.17□□□□□ -0.62
USP39-220ENST00000613444 PRR20EP86478 221 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 PRR20CP86479 221 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 PRR20DP86480 221 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 PRR20BP86481 221 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 PRR20AP86496 221 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 MIC13Q5XKP0 118 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 ZNF709Q8N972 641 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 MED9Q9NWA0 146 aa11.17□□□□□ -0.62
USP39-220ENST00000613444 TRBV9A0A0B4J1U6 114 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 LINC00869P0C866 280 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 OR10J1P30954 320 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 RPL29P47914 159 aaKnown RBP11.16□□□□□ -0.62
USP39-220ENST00000613444 RAB2AP61019 212 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 FFAR4Q5NUL3 377 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 FAM213BQ8TBF2 198 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 PXMP4Q9Y6I8 212 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 NF1P21359 2839 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 NDUFB8O95169 186 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 HNF1AP20823 631 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 PPIFP30405 207 aaKnown RBP11.16□□□□□ -0.62
USP39-220ENST00000613444 BLOC1S1P78537 153 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 ZNF726P1Q15940 193 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 TMEM41BQ5BJD5 291 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 DPPA3Q6W0C5 159 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 RPP25LQ8N5L8 163 aaKnown RBP11.16□□□□□ -0.62
USP39-220ENST00000613444 TMEM86BQ8N661 226 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 STPG3Q8N7X2 389 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 OR4X1Q8NH49 305 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 NOL4LQ96MY1 436 aaPredicted RBP11.16□□□□□ -0.62
USP39-220ENST00000613444 ZNF580Q9UK33 172 aa11.16□□□□□ -0.62
USP39-220ENST00000613444 F8W735 103 aaPredicted RBP11.15□□□□□ -0.62
USP39-220ENST00000613444 TEX46H3BTG2 121 aa11.15□□□□□ -0.62
USP39-220ENST00000613444 OR2J3O76001 311 aa11.15□□□□□ -0.62
USP39-220ENST00000613444 DEFA5Q01523 94 aa11.15□□□□□ -0.62
USP39-220ENST00000613444 RAB31Q13636 194 aa11.15□□□□□ -0.62
USP39-220ENST00000613444 GCSAMLQ5JQS6 135 aa11.15□□□□□ -0.62
USP39-220ENST00000613444 SSX7Q7RTT5 188 aa11.15□□□□□ -0.62
USP39-220ENST00000613444 DUX5Q96PT3 197 aa11.15□□□□□ -0.62
USP39-220ENST00000613444 NSD1Q96L73 2696 aaPredicted RBP11.15□□□□□ -0.62
USP39-220ENST00000613444 MFSD2BA6NFX1 497 aa11.14□□□□□ -0.63
USP39-220ENST00000613444 TSPAN9O75954 239 aa11.14□□□□□ -0.63
USP39-220ENST00000613444 GATA2P23769 480 aaPredicted RBP11.14□□□□□ -0.63
USP39-220ENST00000613444 B2MP61769 119 aa11.14□□□□□ -0.63
USP39-220ENST00000613444 ZNF90Q03938 601 aa11.14□□□□□ -0.63
USP39-220ENST00000613444 RCC1LQ96I51 464 aaKnown RBP11.14□□□□□ -0.63
USP39-220ENST00000613444 GSX1Q9H4S2 264 aaPredicted RBP11.14□□□□□ -0.63
USP39-220ENST00000613444 SLC39A9Q9NUM3 307 aa11.14□□□□□ -0.63
USP39-220ENST00000613444 TCRBV4S1A1TA0A5B7 111 aa11.14□□□□□ -0.63
USP39-220ENST00000613444 AP4M1O00189 453 aa11.14□□□□□ -0.63
USP39-220ENST00000613444 TSPAN15O95858 294 aa11.14□□□□□ -0.63
USP39-220ENST00000613444 HIST1H1BP16401 226 aaKnown RBP11.14□□□□□ -0.63
USP39-220ENST00000613444 CFHR3Q02985 330 aa11.14□□□□□ -0.63
USP39-220ENST00000613444 ZNF616Q08AN1 781 aa11.14□□□□□ -0.63
USP39-220ENST00000613444 TMEM95Q3KNT9 176 aa11.14□□□□□ -0.63
USP39-220ENST00000613444 CYP2G1PQ6ZSU1 146 aa11.14□□□□□ -0.63
USP39-220ENST00000613444 BPIFCQ8NFQ6 507 aa11.14□□□□□ -0.63
USP39-220ENST00000613444 TRGV9Q99603 122 aa11.14□□□□□ -0.63
USP39-220ENST00000613444 ESM1Q9NQ30 184 aa11.14□□□□□ -0.63
USP39-220ENST00000613444 THYN1Q9P016 225 aa11.14□□□□□ -0.63
USP39-220ENST00000613444 CYB5BO43169 146 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 BRI3O95415 125 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 MBP02144 154 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 IGLC1P0CG04 106 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 FOSL1P15407 271 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 M6PRP20645 277 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 SPSB3Q6PJ21 355 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 HRH4Q9H3N8 390 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 ZNF702PQ9H963 129 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 KCNIP2Q9NS61 270 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 FBXL7Q9UJT9 491 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 S4R3C0 116 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms