RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 SPIN2AQ99865 258 aa6.77□□□□□ -1.33
TRIM28-214ENST00000600840 SPIN2BQ9BPZ2 258 aa6.77□□□□□ -1.33
TRIM28-214ENST00000600840 COMMD5Q9GZQ3 224 aa6.77□□□□□ -1.33
TRIM28-214ENST00000600840 KLK15Q9H2R5 256 aa6.77□□□□□ -1.33
TRIM28-214ENST00000600840 PARP11Q9NR21 331 aa6.77□□□□□ -1.33
TRIM28-214ENST00000600840 MBD2Q9UBB5 411 aa6.77□□□□□ -1.33
TRIM28-214ENST00000600840 TENM3Q9P273 2699 aa6.77□□□□□ -1.33
TRIM28-214ENST00000600840 C13orf42A0A1B0GVH6 325 aa6.76□□□□□ -1.33
TRIM28-214ENST00000600840 FAM90A26D6RGX4 464 aa6.76□□□□□ -1.33
TRIM28-214ENST00000600840 C3orf84H3BNL1 204 aa6.76□□□□□ -1.33
TRIM28-214ENST00000600840 JTBO76095 146 aa6.76□□□□□ -1.33
TRIM28-214ENST00000600840 CNIH1O95406 144 aa6.76□□□□□ -1.33
TRIM28-214ENST00000600840 MBPP02686 304 aaPredicted RBP6.76□□□□□ -1.33
TRIM28-214ENST00000600840 TMEM267Q0VDI3 215 aaPredicted RBP6.76□□□□□ -1.33
TRIM28-214ENST00000600840 IAH1Q2TAA2 248 aaPredicted RBP6.76□□□□□ -1.33
TRIM28-214ENST00000600840 DEFB136Q30KP8 78 aa6.76□□□□□ -1.33
TRIM28-214ENST00000600840 UNQ5815/PRO19632Q6UWF5 114 aa6.76□□□□□ -1.33
TRIM28-214ENST00000600840 ZNF114Q8NC26 417 aa6.76□□□□□ -1.33
TRIM28-214ENST00000600840 KLHL30-AS1Q8NEE0 82 aa6.76□□□□□ -1.33
TRIM28-214ENST00000600840 RAX2Q96IS3 184 aa6.76□□□□□ -1.33
TRIM28-214ENST00000600840 U3KQK5 164 aa6.76□□□□□ -1.33
TRIM28-214ENST00000600840 IGLV11-55A0A075B6I3 123 aa6.75□□□□□ -1.33
TRIM28-214ENST00000600840 E5RGE8 158 aa6.75□□□□□ -1.33
TRIM28-214ENST00000600840 H0YIZ8 118 aa6.75□□□□□ -1.33
TRIM28-214ENST00000600840 ACTL6BO94805 426 aa6.75□□□□□ -1.33
TRIM28-214ENST00000600840 ELANEP08246 267 aa6.75□□□□□ -1.33
TRIM28-214ENST00000600840 APELAP0DMC3 54 aa6.75□□□□□ -1.33
TRIM28-214ENST00000600840 RNASE2P10153 161 aaKnown RBP6.75□□□□□ -1.33
TRIM28-214ENST00000600840 BLOC1S1P78537 153 aa6.75□□□□□ -1.33
TRIM28-214ENST00000600840 FOXE3Q13461 319 aa6.75□□□□□ -1.33
TRIM28-214ENST00000600840 LRRC37A5PQ49AS3 106 aa6.75□□□□□ -1.33
TRIM28-214ENST00000600840 SPINK9Q5DT21 86 aa6.75□□□□□ -1.33
TRIM28-214ENST00000600840 CASC10Q5T4H9 136 aa6.75□□□□□ -1.33
TRIM28-214ENST00000600840 IL34Q6ZMJ4 242 aa6.75□□□□□ -1.33
TRIM28-214ENST00000600840 OR5T1Q8NG75 326 aa6.75□□□□□ -1.33
TRIM28-214ENST00000600840 OR1S1Q8NH92 325 aa6.75□□□□□ -1.33
TRIM28-214ENST00000600840 RNF126Q9BV68 326 aa6.75□□□□□ -1.33
TRIM28-214ENST00000600840 RBKSQ9H477 322 aa6.75□□□□□ -1.33
TRIM28-214ENST00000600840 RCL1Q9Y2P8 373 aaKnown RBP6.75□□□□□ -1.33
TRIM28-214ENST00000600840 BORCS7-ASMTA0A0B4J1R7 106 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 LCE6AA0A183 80 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 A0A1W2PN81 502 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 PMS2P5A8MQ11 134 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 H3BUA1 57 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 K7EPK0 472 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 SYNGR2O43760 224 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 DEDDO75618 318 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 IFNA17P01571 189 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 PRH1P02810 166 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 REG1AP05451 166 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 OR13C7P0DN81 318 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 PVALBP20472 110 aaPredicted RBP6.74□□□□□ -1.33
TRIM28-214ENST00000600840 CHRNA7P36544 502 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 MYCNOSP40205 109 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 RAB5CP51148 216 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 RAB9AP51151 201 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 POLR2GP62487 172 aaKnown RBP eCLIP6.74□□□□□ -1.33
TRIM28-214ENST00000600840 ECSCRQ19T08 205 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 TEX38Q6PEX7 206 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 COMMD1Q8N668 190 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 ZNF491Q8N8L2 437 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 RNASE11Q8TAA1 199 aaKnown RBP6.74□□□□□ -1.33
TRIM28-214ENST00000600840 MARC2Q969Z3 335 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 ZNF414Q96IQ9 312 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 CACFD1Q9UGQ2 172 aa6.74□□□□□ -1.33
TRIM28-214ENST00000600840 F11RQ9Y624 299 aaKnown RBP6.74□□□□□ -1.33
TRIM28-214ENST00000600840 C15orf62A8K5M9 175 aa6.73□□□□□ -1.33
TRIM28-214ENST00000600840 PRSS46E5RG02 174 aa6.73□□□□□ -1.33
TRIM28-214ENST00000600840 K7EIM0 57 aa6.73□□□□□ -1.33
TRIM28-214ENST00000600840 CCL24O00175 119 aa6.73□□□□□ -1.33
TRIM28-214ENST00000600840 NXPH3O95157 252 aa6.73□□□□□ -1.33
TRIM28-214ENST00000600840 NDUFB8O95169 186 aa6.73□□□□□ -1.33
TRIM28-214ENST00000600840 NKX2-1P43699 371 aaPredicted RBP6.73□□□□□ -1.33
TRIM28-214ENST00000600840 P2RY1P47900 373 aa6.73□□□□□ -1.33
TRIM28-214ENST00000600840 RAB32Q13637 225 aa6.73□□□□□ -1.33
TRIM28-214ENST00000600840 C2orf83Q53S99 150 aa6.73□□□□□ -1.33
TRIM28-214ENST00000600840 OR1P1Q8NH06 330 aa6.73□□□□□ -1.33
TRIM28-214ENST00000600840 DTD1Q8TEA8 209 aa6.73□□□□□ -1.33
TRIM28-214ENST00000600840 SMIM8Q96KF7 97 aa6.73□□□□□ -1.33
TRIM28-214ENST00000600840 HINT2Q9BX68 163 aa6.73□□□□□ -1.33
TRIM28-214ENST00000600840 MAGT1Q9H0U3 335 aa6.73□□□□□ -1.33
TRIM28-214ENST00000600840 PLEKHA3Q9HB20 300 aa6.73□□□□□ -1.33
TRIM28-214ENST00000600840 ZC4H2Q9NQZ6 224 aa6.73□□□□□ -1.33
TRIM28-214ENST00000600840 GSKIPQ9P0R6 139 aa6.73□□□□□ -1.33
TRIM28-214ENST00000600840 F8W735 103 aaPredicted RBP6.72□□□□□ -1.33
TRIM28-214ENST00000600840 I3L2K1 104 aa6.72□□□□□ -1.33
TRIM28-214ENST00000600840 RPL12P30050 165 aaKnown RBP6.72□□□□□ -1.33
TRIM28-214ENST00000600840 CDX1P47902 265 aaPredicted RBP6.72□□□□□ -1.33
TRIM28-214ENST00000600840 ATP5IP56385 69 aaPredicted RBP6.72□□□□□ -1.33
TRIM28-214ENST00000600840 TAS2R30P59541 319 aa6.72□□□□□ -1.33
TRIM28-214ENST00000600840 S100A10P60903 97 aa6.72□□□□□ -1.33
TRIM28-214ENST00000600840 SLC35B1P78383 322 aa6.72□□□□□ -1.33
TRIM28-214ENST00000600840 ERHP84090 104 aaKnown RBP6.72□□□□□ -1.33
TRIM28-214ENST00000600840 MLANAQ16655 118 aa6.72□□□□□ -1.33
TRIM28-214ENST00000600840 TMEM14EPQ6UXP3 125 aa6.72□□□□□ -1.33
TRIM28-214ENST00000600840 UBAC2Q8NBM4 344 aa6.72□□□□□ -1.33
TRIM28-214ENST00000600840 ABHD5Q8WTS1 349 aa6.72□□□□□ -1.33
TRIM28-214ENST00000600840 CXorf58Q96LI9 332 aa6.72□□□□□ -1.33
TRIM28-214ENST00000600840 UBE2E2Q96LR5 201 aa6.72□□□□□ -1.33
TRIM28-214ENST00000600840 MS4A10Q96PG2 267 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms