RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 NOTOA8MTQ0 251 aa7.18□□□□□ -1.26
TRIM28-210ENST00000597618 PGLYRP1O75594 196 aaPredicted RBP7.18□□□□□ -1.26
TRIM28-210ENST00000597618 TMEM50AO95807 157 aa7.18□□□□□ -1.26
TRIM28-210ENST00000597618 ERHP84090 104 aaKnown RBP7.18□□□□□ -1.26
TRIM28-210ENST00000597618 OGFRL1Q5TC84 451 aaPredicted RBP7.18□□□□□ -1.26
TRIM28-210ENST00000597618 FAM222AQ5U5X8 452 aa7.18□□□□□ -1.26
TRIM28-210ENST00000597618 SPATA12Q7Z6I5 190 aa7.18□□□□□ -1.26
TRIM28-210ENST00000597618 CMTM1Q8IZ96 169 aa7.18□□□□□ -1.26
TRIM28-210ENST00000597618 ATG101Q9BSB4 218 aa7.18□□□□□ -1.26
TRIM28-210ENST00000597618 VCXQ9H320 206 aa7.18□□□□□ -1.26
TRIM28-210ENST00000597618 DUSP21Q9H596 190 aa7.18□□□□□ -1.26
TRIM28-210ENST00000597618 NDUFB11Q9NX14 153 aa7.18□□□□□ -1.26
TRIM28-210ENST00000597618 TRDV1A0A1B0GX56 115 aa7.17□□□□□ -1.26
TRIM28-210ENST00000597618 SMIM30A4D0T7 59 aa7.17□□□□□ -1.26
TRIM28-210ENST00000597618 EPM2AB3EWF7 344 aa7.17□□□□□ -1.26
TRIM28-210ENST00000597618 H3BMM0 161 aa7.17□□□□□ -1.26
TRIM28-210ENST00000597618 AP2S1P53680 142 aaPredicted RBP7.17□□□□□ -1.26
TRIM28-210ENST00000597618 PRSS48Q7RTY5 328 aa7.17□□□□□ -1.26
TRIM28-210ENST00000597618 OR5AP2Q8NGF4 316 aa7.17□□□□□ -1.26
TRIM28-210ENST00000597618 OR4A16Q8NH70 328 aa7.17□□□□□ -1.26
TRIM28-210ENST00000597618 SEPSECSQ9HD40 501 aaKnown RBP7.17□□□□□ -1.26
TRIM28-210ENST00000597618 RHBDL2Q9NX52 303 aa7.17□□□□□ -1.26
TRIM28-210ENST00000597618 TRAV18A0A075B6X5 111 aa7.16□□□□□ -1.26
TRIM28-210ENST00000597618 IGHV3OR16-12A0A075B7B8 117 aa7.16□□□□□ -1.26
TRIM28-210ENST00000597618 CORTO00230 105 aa7.16□□□□□ -1.26
TRIM28-210ENST00000597618 HLA-DRB4P13762 266 aa7.16□□□□□ -1.26
TRIM28-210ENST00000597618 SNCAP37840 140 aa7.16□□□□□ -1.26
TRIM28-210ENST00000597618 CBX5P45973 191 aa7.16□□□□□ -1.26
TRIM28-210ENST00000597618 PPP5CP53041 499 aa7.16□□□□□ -1.26
TRIM28-210ENST00000597618 HSPE1P61604 102 aaKnown RBP7.16□□□□□ -1.26
TRIM28-210ENST00000597618 C22orf42Q6IC83 251 aa7.16□□□□□ -1.26
TRIM28-210ENST00000597618 H2BFWTQ7Z2G1 175 aa7.16□□□□□ -1.26
TRIM28-210ENST00000597618 ZNRF2Q8NHG8 242 aa7.16□□□□□ -1.26
TRIM28-210ENST00000597618 LGALS14Q8TCE9 139 aa7.16□□□□□ -1.26
TRIM28-210ENST00000597618 TMEM230Q96A57 120 aa7.16□□□□□ -1.26
TRIM28-210ENST00000597618 HLA-DRB4X5D2U9 266 aa7.16□□□□□ -1.26
TRIM28-210ENST00000597618 SRRM2Q9UQ35 2752 aaKnown RBP7.16□□□□□ -1.26
TRIM28-210ENST00000597618 A0A0A6YYH2 397 aa7.15□□□□□ -1.26
TRIM28-210ENST00000597618 A6NJ64 397 aa7.15□□□□□ -1.26
TRIM28-210ENST00000597618 FAM90A26D6RGX4 464 aa7.15□□□□□ -1.26
TRIM28-210ENST00000597618 GPR31O00270 319 aa7.15□□□□□ -1.26
TRIM28-210ENST00000597618 CLN5O75503 358 aa7.15□□□□□ -1.26
TRIM28-210ENST00000597618 FCER2P06734 321 aa7.15□□□□□ -1.26
TRIM28-210ENST00000597618 INAFM2P0DMQ5 153 aa7.15□□□□□ -1.26
TRIM28-210ENST00000597618 HOXA1P49639 335 aaPredicted RBP7.15□□□□□ -1.26
TRIM28-210ENST00000597618 DAD1P61803 113 aa7.15□□□□□ -1.26
TRIM28-210ENST00000597618 TBCEQ15813 527 aaPredicted RBP7.15□□□□□ -1.26
TRIM28-210ENST00000597618 DHRS11Q6UWP2 260 aa7.15□□□□□ -1.26
TRIM28-210ENST00000597618 GSG1LQ6UXU4 331 aa7.15□□□□□ -1.26
TRIM28-210ENST00000597618 GLMPQ8WWB7 406 aa7.15□□□□□ -1.26
TRIM28-210ENST00000597618 ZNF2Q9BSG1 426 aaPredicted RBP7.15□□□□□ -1.26
TRIM28-210ENST00000597618 NRN1Q9NPD7 142 aa7.15□□□□□ -1.26
TRIM28-210ENST00000597618 FAM212BQ9NTI7 297 aaPredicted RBP7.15□□□□□ -1.26
TRIM28-210ENST00000597618 EHFQ9NZC4 300 aa7.15□□□□□ -1.26
TRIM28-210ENST00000597618 LOC102723971A0A1B0GUV8 181 aa7.14□□□□□ -1.27
TRIM28-210ENST00000597618 HBE1P02100 147 aa7.14□□□□□ -1.27
TRIM28-210ENST00000597618 S100GP29377 79 aa7.14□□□□□ -1.27
TRIM28-210ENST00000597618 NKX2-1P43699 371 aaPredicted RBP7.14□□□□□ -1.27
TRIM28-210ENST00000597618 SUB1P53999 127 aaKnown RBP eCLIP7.14□□□□□ -1.276e-7■■■□□ 18.1
TRIM28-210ENST00000597618 SCAND1P57086 179 aa7.14□□□□□ -1.27
TRIM28-210ENST00000597618 SFXN4Q6P4A7 337 aa7.14□□□□□ -1.27
TRIM28-210ENST00000597618 C16orf54Q6UWD8 224 aa7.14□□□□□ -1.27
TRIM28-210ENST00000597618 SLC35G3Q8N808 338 aa7.14□□□□□ -1.27
TRIM28-210ENST00000597618 OR4X1Q8NH49 305 aa7.14□□□□□ -1.27
TRIM28-210ENST00000597618 SEC22AQ96IW7 307 aa7.14□□□□□ -1.27
TRIM28-210ENST00000597618 AUNIPQ9H7T9 357 aa7.14□□□□□ -1.27
TRIM28-210ENST00000597618 IFT46Q9NQC8 304 aa7.14□□□□□ -1.27
TRIM28-210ENST00000597618 RRP15Q9Y3B9 282 aaKnown RBP7.14□□□□□ -1.27
TRIM28-210ENST00000597618 GOLT1BQ9Y3E0 138 aa7.14□□□□□ -1.27
TRIM28-210ENST00000597618 YTHDF2Q9Y5A9 579 aaKnown RBP7.14□□□□□ -1.27
TRIM28-210ENST00000597618 U3KQE9 123 aa7.14□□□□□ -1.27
TRIM28-210ENST00000597618 TRAV30A0A087WSZ9 112 aa7.13□□□□□ -1.27
TRIM28-210ENST00000597618 INS-IGF2F8WCM5 200 aa7.13□□□□□ -1.27
TRIM28-210ENST00000597618 IGKV1-17P01599 117 aa7.13□□□□□ -1.27
TRIM28-210ENST00000597618 HNRNPCP07910 306 aaKnown RBP eCLIP7.13□□□□□ -1.27
TRIM28-210ENST00000597618 OPRK1P41145 380 aa7.13□□□□□ -1.27
TRIM28-210ENST00000597618 ALDH3B2P48448 385 aa7.13□□□□□ -1.27
TRIM28-210ENST00000597618 SPINK9Q5DT21 86 aa7.13□□□□□ -1.27
TRIM28-210ENST00000597618 SLC25A38Q96DW6 304 aa7.13□□□□□ -1.27
TRIM28-210ENST00000597618 FXYD6Q9H0Q3 95 aa7.13□□□□□ -1.27
TRIM28-210ENST00000597618 MEIS3P1A6NDR6 274 aa7.12□□□□□ -1.27
TRIM28-210ENST00000597618 GSTZ1O43708 216 aaPredicted RBP7.12□□□□□ -1.27
TRIM28-210ENST00000597618 IGKV3-20P01619 116 aa7.12□□□□□ -1.27
TRIM28-210ENST00000597618 RPL5P46777 297 aaKnown RBP7.12□□□□□ -1.27
TRIM28-210ENST00000597618 RFX2P48378 723 aa7.12□□□□□ -1.27
TRIM28-210ENST00000597618 CCL18P55774 89 aa7.12□□□□□ -1.27
TRIM28-210ENST00000597618 FXYD7P58549 80 aa7.12□□□□□ -1.27
TRIM28-210ENST00000597618 TAS2R46P59540 309 aa7.12□□□□□ -1.27
TRIM28-210ENST00000597618 KRTAP10-2P60368 255 aa7.12□□□□□ -1.27
TRIM28-210ENST00000597618 RRN3P1Q2M238 152 aa7.12□□□□□ -1.27
TRIM28-210ENST00000597618 TIGITQ495A1 244 aa7.12□□□□□ -1.27
TRIM28-210ENST00000597618 PHLDA2Q53GA4 152 aa7.12□□□□□ -1.27
TRIM28-210ENST00000597618 SIGLEC15Q6ZMC9 328 aa7.12□□□□□ -1.27
TRIM28-210ENST00000597618 ZNF709Q8N972 641 aa7.12□□□□□ -1.27
TRIM28-210ENST00000597618 MRGPRFQ96AM1 343 aa7.12□□□□□ -1.27
TRIM28-210ENST00000597618 CLUHP3Q96NS8 147 aa7.12□□□□□ -1.27
TRIM28-210ENST00000597618 C7orf50Q9BRJ6 194 aaKnown RBP7.12□□□□□ -1.27
TRIM28-210ENST00000597618 FNDC4Q9H6D8 234 aaPredicted RBP7.12□□□□□ -1.27
TRIM28-210ENST00000597618 DIABLOQ9NR28 239 aa7.12□□□□□ -1.27
TRIM28-210ENST00000597618 MRPL36Q9P0J6 103 aaKnown RBP7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms