RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ACSM6Q6P461 480 aa11.95□□□□□ -0.5
TRIM28-209ENST00000597423 Q6ZS46 218 aa11.95□□□□□ -0.5
TRIM28-209ENST00000597423 CENPVQ7Z7K6 275 aaPredicted RBP11.95□□□□□ -0.5
TRIM28-209ENST00000597423 FAM223AQ8IWN6 122 aa11.95□□□□□ -0.5
TRIM28-209ENST00000597423 HSD17B11Q8NBQ5 300 aa11.95□□□□□ -0.5
TRIM28-209ENST00000597423 TMEM116Q8NCL8 245 aa11.95□□□□□ -0.5
TRIM28-209ENST00000597423 ACY3Q96HD9 319 aa11.95□□□□□ -0.5
TRIM28-209ENST00000597423 NOL4LQ96MY1 436 aaPredicted RBP11.95□□□□□ -0.5
TRIM28-209ENST00000597423 TXN2Q99757 166 aa11.95□□□□□ -0.5
TRIM28-209ENST00000597423 TIMM9Q9Y5J7 89 aa11.95□□□□□ -0.5
TRIM28-209ENST00000597423 SONP18583 2426 aaKnown RBP11.94□□□□□ -0.5
TRIM28-209ENST00000597423 TRBV9A0A0B4J1U6 114 aa11.94□□□□□ -0.5
TRIM28-209ENST00000597423 CYSRT1A8MQ03 144 aa11.94□□□□□ -0.5
TRIM28-209ENST00000597423 OR2J3O76001 311 aa11.94□□□□□ -0.5
TRIM28-209ENST00000597423 TRGV3P03979 118 aa11.94□□□□□ -0.5
TRIM28-209ENST00000597423 SEC11BP0C7V7 166 aa11.94□□□□□ -0.5
TRIM28-209ENST00000597423 RHOGP84095 191 aa11.94□□□□□ -0.5
TRIM28-209ENST00000597423 SERF2P84101 59 aa11.94□□□□□ -0.5
TRIM28-209ENST00000597423 MLANAQ16655 118 aa11.94□□□□□ -0.5
TRIM28-209ENST00000597423 TEX38Q6PEX7 206 aa11.94□□□□□ -0.5
TRIM28-209ENST00000597423 TREML4Q6UXN2 200 aa11.94□□□□□ -0.5
TRIM28-209ENST00000597423 ZNF767PQ75MW2 155 aa11.94□□□□□ -0.5
TRIM28-209ENST00000597423 COMMD1Q8N668 190 aa11.94□□□□□ -0.5
TRIM28-209ENST00000597423 OR4X1Q8NH49 305 aa11.94□□□□□ -0.5
TRIM28-209ENST00000597423 SCARB1Q8WTV0 552 aa11.94□□□□□ -0.5
TRIM28-209ENST00000597423 NPIPB3Q92617 1050 aa11.94□□□□□ -0.5
TRIM28-209ENST00000597423 EEF1AKMT3Q96AZ1 226 aa11.94□□□□□ -0.5
TRIM28-209ENST00000597423 MS4A10Q96PG2 267 aa11.94□□□□□ -0.5
TRIM28-209ENST00000597423 PSMG3Q9BT73 122 aaPredicted RBP11.94□□□□□ -0.5
TRIM28-209ENST00000597423 FNDC4Q9H6D8 234 aaPredicted RBP11.94□□□□□ -0.5
TRIM28-209ENST00000597423 CELSR1Q9NYQ6 3014 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 HIVEP1P15822 2718 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 TRBV7-1A0A0A6YYK4 115 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 PSMB11A5LHX3 300 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 K7EIM0 57 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 NDUFB8O95169 186 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 IGLV1-40P01703 118 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 IGHG4P01861 327 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 PF4V1P10720 104 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 MDKP21741 143 aaPredicted RBP11.93□□□□□ -0.5
TRIM28-209ENST00000597423 ATP6V0CP27449 155 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 CAMLGP49069 296 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 RND2P52198 227 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 FAM209BQ5JX69 171 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 C19orf35Q6ZS72 473 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 ZNF680Q8NEM1 530 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 ATP6V0BQ99437 205 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 C21orf62Q9NYP8 219 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 UBQLN2Q9UHD9 624 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 DMRT1Q9Y5R6 373 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 PLXNB1O43157 2135 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 SVEP1Q4LDE5 3571 aa11.93□□□□□ -0.5
TRIM28-209ENST00000597423 MXRA5Q9NR99 2828 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 SETXQ7Z333 2677 aaKnown RBP11.92□□□□□ -0.5
TRIM28-209ENST00000597423 ZFP92A6NM28 416 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 UMAD1C9J7I0 102 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 CLN5O75503 358 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 MBP02144 154 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 ELANEP08246 267 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 SPP1P10451 314 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 RAB5CP51148 216 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 TPPP2P59282 170 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 RAB14P61106 215 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 SELENOTP62341 195 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 FOXE3Q13461 319 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 C15orf32Q32M92 178 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 Q6ZSV7 163 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 THAP8Q8NA92 274 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 OR2G3Q8NGZ4 309 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 LRRC20Q8TCA0 184 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 NPCDR1Q9BY65 106 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 SLC25A32Q9H2D1 315 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 C16orf95Q9H693 158 aa11.92□□□□□ -0.5
TRIM28-209ENST00000597423 LSM4Q9Y4Z0 139 aaKnown RBP11.92□□□□□ -0.5
TRIM28-209ENST00000597423 GNG7O60262 68 aa11.91□□□□□ -0.5
TRIM28-209ENST00000597423 NDUFA7O95182 113 aa11.91□□□□□ -0.5
TRIM28-209ENST00000597423 FCGR2BP31994 310 aaPredicted RBP11.91□□□□□ -0.5
TRIM28-209ENST00000597423 RAB9AP51151 201 aa11.91□□□□□ -0.5
TRIM28-209ENST00000597423 CFHR3Q02985 330 aa11.91□□□□□ -0.5
TRIM28-209ENST00000597423 Q56UQ5 140 aa11.91□□□□□ -0.5
TRIM28-209ENST00000597423 OR4F5Q8NH21 305 aa11.91□□□□□ -0.5
TRIM28-209ENST00000597423 TMED6Q8WW62 240 aa11.91□□□□□ -0.5
TRIM28-209ENST00000597423 TRGV9Q99603 122 aa11.91□□□□□ -0.5
TRIM28-209ENST00000597423 IGHV3-21A0A0B4J1V1 117 aa11.9□□□□□ -0.5
TRIM28-209ENST00000597423 AGPAT2O15120 278 aa11.9□□□□□ -0.5
TRIM28-209ENST00000597423 CFDP00746 253 aaPredicted RBP11.9□□□□□ -0.5
TRIM28-209ENST00000597423 IGHV3-48P01763 117 aa11.9□□□□□ -0.5
TRIM28-209ENST00000597423 OR10J1P30954 320 aa11.9□□□□□ -0.5
TRIM28-209ENST00000597423 RPL29P47914 159 aaKnown RBP11.9□□□□□ -0.5
TRIM28-209ENST00000597423 TMEM95Q3KNT9 176 aa11.9□□□□□ -0.5
TRIM28-209ENST00000597423 AKR1C8PQ5T2L2 129 aa11.9□□□□□ -0.5
TRIM28-209ENST00000597423 ALKAL2Q6UX46 152 aa11.9□□□□□ -0.5
TRIM28-209ENST00000597423 RNF141Q8WVD5 230 aa11.9□□□□□ -0.5
TRIM28-209ENST00000597423 SERTAD4Q9NUC0 356 aa11.9□□□□□ -0.5
TRIM28-209ENST00000597423 TCRBV4S1A1TA0A5B7 111 aa11.89□□□□□ -0.51
TRIM28-209ENST00000597423 NUPL2O15504 423 aaKnown RBP11.89□□□□□ -0.51
TRIM28-209ENST00000597423 TSPAN15O95858 294 aa11.89□□□□□ -0.51
TRIM28-209ENST00000597423 RUNX1Q01196 453 aa11.89□□□□□ -0.51
TRIM28-209ENST00000597423 IFITM2Q01629 132 aa11.89□□□□□ -0.51
TRIM28-209ENST00000597423 ACOT6Q3I5F7 207 aaPredicted RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms