RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 OR4F5Q8NH21 305 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 OR4F4Q96R69 305 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 SEPSECSQ9HD40 501 aaKnown RBP11.3□□□□□ -0.6
LIG3-205ENST00000585941 TMEM167BQ9NRX6 74 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 TECRQ9NZ01 308 aaKnown RBP11.3□□□□□ -0.6
LIG3-205ENST00000585941 UBR5O95071 2799 aaPredicted RBP11.3□□□□□ -0.6
LIG3-205ENST00000585941 IGHV4-61A0A0C4DH41 118 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 ZNF727A8MUV8 499 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 C11orf94C9JXX5 98 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 F6UZH7 168 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 NPFFO15130 113 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 TMEM11P17152 192 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 GCHFRP30047 84 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 RND2P52198 227 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 FXYD3Q14802 87 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 PQLC2Q6ZP29 291 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 DYNAPQ8N1N2 210 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 TRGV9Q99603 122 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 C20orf24Q9BUV8 137 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 PRELID1Q9Y255 219 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 EPG5Q9HCE0 2579 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 MED13LQ71F56 2210 aa11.29□□□□□ -0.6
LIG3-205ENST00000585941 CTRB1P17538 263 aa11.29□□□□□ -0.6
LIG3-205ENST00000585941 SAA4P35542 130 aa11.29□□□□□ -0.6
LIG3-205ENST00000585941 MFAP2P55001 183 aa11.29□□□□□ -0.6
LIG3-205ENST00000585941 BPIFB3P59826 476 aa11.29□□□□□ -0.6
LIG3-205ENST00000585941 CTRB2Q6GPI1 263 aa11.29□□□□□ -0.6
LIG3-205ENST00000585941 SMIM7Q9BQ49 75 aa11.29□□□□□ -0.6
LIG3-205ENST00000585941 DNAJC4Q9NNZ3 241 aa11.29□□□□□ -0.6
LIG3-205ENST00000585941 NAT8Q9UHE5 227 aa11.29□□□□□ -0.6
LIG3-205ENST00000585941 NCBP2LA6PVI3 153 aaKnown RBP11.28□□□□□ -0.6
LIG3-205ENST00000585941 SLC25A16P16260 332 aa11.28□□□□□ -0.6
LIG3-205ENST00000585941 CST9LP1Q5W188 147 aa11.28□□□□□ -0.6
LIG3-205ENST00000585941 SLC25A33Q9BSK2 321 aa11.28□□□□□ -0.6
LIG3-205ENST00000585941 WNT10AQ9GZT5 417 aa11.28□□□□□ -0.6
LIG3-205ENST00000585941 SDF2L1Q9HCN8 221 aa11.28□□□□□ -0.6
LIG3-205ENST00000585941 TNFRSF19Q9NS68 423 aa11.28□□□□□ -0.6
LIG3-205ENST00000585941 COL12A1Q99715 3063 aa11.28□□□□□ -0.6
LIG3-205ENST00000585941 IGKV1D-37A0A075B6S9 117 aa11.27□□□□□ -0.6
LIG3-205ENST00000585941 ELOA3CA0A087WX78 387 aaPredicted RBP11.27□□□□□ -0.6
LIG3-205ENST00000585941 NPIPB5A8MRT5 1133 aa11.27□□□□□ -0.6
LIG3-205ENST00000585941 COX7A2P2O60397 106 aa11.27□□□□□ -0.6
LIG3-205ENST00000585941 CD24P25063 80 aa11.27□□□□□ -0.6
LIG3-205ENST00000585941 SRSF1Q07955 248 aaKnown RBP eCLIP11.27□□□□□ -0.6
LIG3-205ENST00000585941 TMEM241Q24JQ0 296 aa11.27□□□□□ -0.6
LIG3-205ENST00000585941 MIR17HGQ75NE6 70 aa11.27□□□□□ -0.6
LIG3-205ENST00000585941 ARPC1AQ92747 370 aa11.27□□□□□ -0.6
LIG3-205ENST00000585941 PERPQ96FX8 193 aa11.27□□□□□ -0.6
LIG3-205ENST00000585941 AJUBAQ96IF1 538 aa11.27□□□□□ -0.6
LIG3-205ENST00000585941 IGHV4-30-2A0A087WSY4 118 aa11.27□□□□□ -0.61
LIG3-205ENST00000585941 CENPVL3A0A0U1RRI6 287 aa11.27□□□□□ -0.61
LIG3-205ENST00000585941 PSMB11A5LHX3 300 aa11.27□□□□□ -0.61
LIG3-205ENST00000585941 CXorf65A6NEN9 183 aa11.27□□□□□ -0.61
LIG3-205ENST00000585941 FABP1P07148 127 aa11.27□□□□□ -0.61
LIG3-205ENST00000585941 C8orf88P0DMB2 117 aa11.27□□□□□ -0.61
LIG3-205ENST00000585941 ATF4P18848 351 aaPredicted RBP11.27□□□□□ -0.61
LIG3-205ENST00000585941 CX3CL1P78423 397 aa11.27□□□□□ -0.61
LIG3-205ENST00000585941 SPATA31B1PQ5VZV4 182 aa11.27□□□□□ -0.61
LIG3-205ENST00000585941 C17orf50Q8WW18 174 aa11.27□□□□□ -0.61
LIG3-205ENST00000585941 IGHV1-69DA0A0B4J2H0 117 aa11.26□□□□□ -0.61
LIG3-205ENST00000585941 I3L2K1 104 aa11.26□□□□□ -0.61
LIG3-205ENST00000585941 IGHV1-69P01742 117 aa11.26□□□□□ -0.61
LIG3-205ENST00000585941 HLA-DRB1P01911 266 aa11.26□□□□□ -0.61
LIG3-205ENST00000585941 MT-ND4LP03901 98 aa11.26□□□□□ -0.61
LIG3-205ENST00000585941 APELAP0DMC3 54 aa11.26□□□□□ -0.61
LIG3-205ENST00000585941 GATA2P23769 480 aaPredicted RBP11.26□□□□□ -0.61
LIG3-205ENST00000585941 GATA3P23771 443 aa11.26□□□□□ -0.61
LIG3-205ENST00000585941 AKR1C3P42330 323 aa11.26□□□□□ -0.61
LIG3-205ENST00000585941 UBE2G2P60604 165 aa11.26□□□□□ -0.61
LIG3-205ENST00000585941 C10orf113Q5VZT2 155 aa11.26□□□□□ -0.61
LIG3-205ENST00000585941 OR4X1Q8NH49 305 aa11.26□□□□□ -0.61
LIG3-205ENST00000585941 UHRF2Q96PU4 802 aa11.26□□□□□ -0.61
LIG3-205ENST00000585941 PARLQ9H300 379 aa11.26□□□□□ -0.61
LIG3-205ENST00000585941 TMEM242Q9NWH2 141 aa11.26□□□□□ -0.61
LIG3-205ENST00000585941 COLCA2A8K830 154 aa11.25□□□□□ -0.61
LIG3-205ENST00000585941 OR2C1O95371 312 aa11.25□□□□□ -0.61
LIG3-205ENST00000585941 MSMBP08118 114 aa11.25□□□□□ -0.61
LIG3-205ENST00000585941 TMEM37Q8WXS4 190 aa11.25□□□□□ -0.61
LIG3-205ENST00000585941 RPUSD4Q96CM3 377 aaKnown RBP11.25□□□□□ -0.61
LIG3-205ENST00000585941 MRPL36Q9P0J6 103 aaKnown RBP11.25□□□□□ -0.61
LIG3-205ENST00000585941 LRRK2Q5S007 2527 aa11.25□□□□□ -0.61
LIG3-205ENST00000585941 FAM208BQ5VWN6 2430 aa11.25□□□□□ -0.61
LIG3-205ENST00000585941 ABCA2Q9BZC7 2435 aa11.25□□□□□ -0.61
LIG3-205ENST00000585941 SPG11Q96JI7 2443 aa11.25□□□□□ -0.61
LIG3-205ENST00000585941 B4DSR2 109 aa11.24□□□□□ -0.61
LIG3-205ENST00000585941 OR7C2O60412 319 aa11.24□□□□□ -0.61
LIG3-205ENST00000585941 IGHV3-48P01763 117 aa11.24□□□□□ -0.61
LIG3-205ENST00000585941 PLP1P60201 277 aa11.24□□□□□ -0.61
LIG3-205ENST00000585941 ZNF90Q03938 601 aa11.24□□□□□ -0.61
LIG3-205ENST00000585941 ZNF674Q2M3X9 581 aa11.24□□□□□ -0.61
LIG3-205ENST00000585941 PIP4P2Q8N4L2 257 aa11.24□□□□□ -0.61
LIG3-205ENST00000585941 TTC9CQ8N5M4 171 aa11.24□□□□□ -0.61
LIG3-205ENST00000585941 Q8N9W7 124 aa11.24□□□□□ -0.61
LIG3-205ENST00000585941 STXBP6Q8NFX7 210 aa11.24□□□□□ -0.61
LIG3-205ENST00000585941 RASL11BQ9BPW5 248 aa11.24□□□□□ -0.61
LIG3-205ENST00000585941 CTDSP1Q9GZU7 261 aa11.24□□□□□ -0.61
LIG3-205ENST00000585941 DOK5Q9P104 306 aa11.24□□□□□ -0.61
LIG3-205ENST00000585941 DMRT1Q9Y5R6 373 aa11.24□□□□□ -0.61
LIG3-205ENST00000585941 ATP5G3P48201 142 aa11.24□□□□□ -0.61
LIG3-205ENST00000585941 CLEC12BQ2HXU8 276 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms