RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 TRAV18A0A075B6X5 111 aa9.04□□□□□ -0.96
SS18-219ENST00000581570 HELTA6NFD8 242 aa9.04□□□□□ -0.96
SS18-219ENST00000581570 SMIM9A6NGZ8 99 aa9.04□□□□□ -0.96
SS18-219ENST00000581570 PPP5CP53041 499 aa9.04□□□□□ -0.96
SS18-219ENST00000581570 FAM3BP58499 235 aaPredicted RBP9.04□□□□□ -0.96
SS18-219ENST00000581570 PRCDQ00LT1 54 aa9.04□□□□□ -0.96
SS18-219ENST00000581570 ZNF705AQ6ZN79 300 aaPredicted RBP9.04□□□□□ -0.96
SS18-219ENST00000581570 PRSS48Q7RTY5 328 aa9.04□□□□□ -0.96
SS18-219ENST00000581570 C6orf223Q8N319 242 aa9.04□□□□□ -0.96
SS18-219ENST00000581570 OR5AP2Q8NGF4 316 aa9.04□□□□□ -0.96
SS18-219ENST00000581570 OR4A16Q8NH70 328 aa9.04□□□□□ -0.96
SS18-219ENST00000581570 DKK2Q9UBU2 259 aa9.04□□□□□ -0.96
SS18-219ENST00000581570 DAPK2Q9UIK4 370 aa9.04□□□□□ -0.96
SS18-219ENST00000581570 TEX48A0A1B0GUV7 120 aa9.03□□□□□ -0.96
SS18-219ENST00000581570 H3BMM0 161 aa9.03□□□□□ -0.96
SS18-219ENST00000581570 EIF2B2P49770 351 aaKnown RBP9.03□□□□□ -0.96
SS18-219ENST00000581570 HSPE1P61604 102 aaKnown RBP9.03□□□□□ -0.96
SS18-219ENST00000581570 FAM222AQ5U5X8 452 aa9.03□□□□□ -0.96
SS18-219ENST00000581570 TMEM88Q6PEY1 159 aa9.03□□□□□ -0.96
SS18-219ENST00000581570 LGALS14Q8TCE9 139 aa9.03□□□□□ -0.96
SS18-219ENST00000581570 TMEM230Q96A57 120 aa9.03□□□□□ -0.96
SS18-219ENST00000581570 YTHDF1Q9BYJ9 559 aaKnown RBP9.03□□□□□ -0.96
SS18-219ENST00000581570 RHBDL2Q9NX52 303 aa9.03□□□□□ -0.96
SS18-219ENST00000581570 RFNGQ9Y644 331 aa9.03□□□□□ -0.96
SS18-219ENST00000581570 IGHV3OR16-12A0A075B7B8 117 aa9.02□□□□□ -0.97
SS18-219ENST00000581570 NBDYA0A0U1RRE5 68 aa9.02□□□□□ -0.97
SS18-219ENST00000581570 ZNF705FA8MVS1 300 aaPredicted RBP9.02□□□□□ -0.97
SS18-219ENST00000581570 ZNF705DP0CH99 300 aaPredicted RBP9.02□□□□□ -0.97
SS18-219ENST00000581570 ZNF705BP0CI00 300 aaPredicted RBP9.02□□□□□ -0.97
SS18-219ENST00000581570 DHRS11Q6UWP2 260 aa9.02□□□□□ -0.97
SS18-219ENST00000581570 H2BFWTQ7Z2G1 175 aa9.02□□□□□ -0.97
SS18-219ENST00000581570 SPATA12Q7Z6I5 190 aa9.02□□□□□ -0.97
SS18-219ENST00000581570 CMTM1Q8IZ96 169 aa9.02□□□□□ -0.97
SS18-219ENST00000581570 ATG101Q9BSB4 218 aa9.02□□□□□ -0.97
SS18-219ENST00000581570 VCXQ9H320 206 aa9.02□□□□□ -0.97
SS18-219ENST00000581570 NDUFB11Q9NX14 153 aa9.02□□□□□ -0.97
SS18-219ENST00000581570 EHFQ9NZC4 300 aa9.02□□□□□ -0.97
SS18-219ENST00000581570 SNCAP37840 140 aa9.01□□□□□ -0.97
SS18-219ENST00000581570 CBX5P45973 191 aa9.01□□□□□ -0.97
SS18-219ENST00000581570 AP2S1P53680 142 aaPredicted RBP9.01□□□□□ -0.97
SS18-219ENST00000581570 SNRPD3P62318 126 aaKnown RBP9.01□□□□□ -0.97
SS18-219ENST00000581570 OXA1LQ15070 435 aa9.01□□□□□ -0.97
SS18-219ENST00000581570 ZNF2Q9BSG1 426 aaPredicted RBP9.01□□□□□ -0.97
SS18-219ENST00000581570 RRP15Q9Y3B9 282 aaKnown RBP9.01□□□□□ -0.97
SS18-219ENST00000581570 MEIS3P1A6NDR6 274 aa9□□□□□ -0.97
SS18-219ENST00000581570 GPR31O00270 319 aa9□□□□□ -0.97
SS18-219ENST00000581570 CLN5O75503 358 aa9□□□□□ -0.97
SS18-219ENST00000581570 RFX2P48378 723 aa9□□□□□ -0.97
SS18-219ENST00000581570 FXYD7P58549 80 aa9□□□□□ -0.97
SS18-219ENST00000581570 TBCEQ15813 527 aaPredicted RBP9□□□□□ -0.97
SS18-219ENST00000581570 SPINK9Q5DT21 86 aa9□□□□□ -0.97
SS18-219ENST00000581570 C16orf54Q6UWD8 224 aa9□□□□□ -0.97
SS18-219ENST00000581570 C15orf53Q8NAA6 179 aa9□□□□□ -0.97
SS18-219ENST00000581570 SEC22AQ96IW7 307 aa9□□□□□ -0.97
SS18-219ENST00000581570 AUNIPQ9H7T9 357 aa9□□□□□ -0.97
SS18-219ENST00000581570 SEPSECSQ9HD40 501 aaKnown RBP9□□□□□ -0.97
SS18-219ENST00000581570 MRPL36Q9P0J6 103 aaKnown RBP9□□□□□ -0.97
SS18-219ENST00000581570 U3KQE9 123 aa9□□□□□ -0.97
SS18-219ENST00000581570 EPM2AB3EWF7 344 aa8.99□□□□□ -0.97
SS18-219ENST00000581570 FAM90A26D6RGX4 464 aa8.99□□□□□ -0.97
SS18-219ENST00000581570 CORTO00230 105 aa8.99□□□□□ -0.97
SS18-219ENST00000581570 SCGB2A1O75556 95 aa8.99□□□□□ -0.97
SS18-219ENST00000581570 HLA-DRB4P13762 266 aa8.99□□□□□ -0.97
SS18-219ENST00000581570 MLANAQ16655 118 aa8.99□□□□□ -0.97
SS18-219ENST00000581570 SFXN4Q6P4A7 337 aa8.99□□□□□ -0.97
SS18-219ENST00000581570 OR5H6Q8NGV6 325 aa8.99□□□□□ -0.97
SS18-219ENST00000581570 OR4X1Q8NH49 305 aa8.99□□□□□ -0.97
SS18-219ENST00000581570 ZNRF2Q8NHG8 242 aa8.99□□□□□ -0.97
SS18-219ENST00000581570 GLMPQ8WWB7 406 aa8.99□□□□□ -0.97
SS18-219ENST00000581570 IFT46Q9NQC8 304 aa8.99□□□□□ -0.97
SS18-219ENST00000581570 FAM212BQ9NTI7 297 aaPredicted RBP8.99□□□□□ -0.97
SS18-219ENST00000581570 HLA-DRB4X5D2U9 266 aa8.99□□□□□ -0.97
SS18-219ENST00000581570 NACAE9PAV3 2078 aa8.98□□□□□ -0.97
SS18-219ENST00000581570 A0A0A6YYH2 397 aa8.98□□□□□ -0.97
SS18-219ENST00000581570 A6NJ64 397 aa8.98□□□□□ -0.97
SS18-219ENST00000581570 IGKV1-39P01597 117 aa8.98□□□□□ -0.97
SS18-219ENST00000581570 IGKV3-20P01619 116 aa8.98□□□□□ -0.97
SS18-219ENST00000581570 PMP2P02689 132 aa8.98□□□□□ -0.97
SS18-219ENST00000581570 IGKV1D-39P04432 117 aa8.98□□□□□ -0.97
SS18-219ENST00000581570 HNRNPCP07910 306 aaKnown RBP eCLIP8.98□□□□□ -0.97
SS18-219ENST00000581570 INAFM2P0DMQ5 153 aa8.98□□□□□ -0.97
SS18-219ENST00000581570 SUB1P53999 127 aaKnown RBP eCLIP8.98□□□□□ -0.97
SS18-219ENST00000581570 DAD1P61803 113 aa8.98□□□□□ -0.97
SS18-219ENST00000581570 TIGITQ495A1 244 aa8.98□□□□□ -0.97
SS18-219ENST00000581570 PHLDA2Q53GA4 152 aa8.98□□□□□ -0.97
SS18-219ENST00000581570 GSG1LQ6UXU4 331 aa8.98□□□□□ -0.97
SS18-219ENST00000581570 SLC25A38Q96DW6 304 aa8.98□□□□□ -0.97
SS18-219ENST00000581570 FXYD6Q9H0Q3 95 aa8.98□□□□□ -0.97
SS18-219ENST00000581570 FNDC4Q9H6D8 234 aaPredicted RBP8.98□□□□□ -0.97
SS18-219ENST00000581570 DIABLOQ9NR28 239 aa8.98□□□□□ -0.97
SS18-219ENST00000581570 TXNL4BQ9NX01 149 aaKnown RBP8.98□□□□□ -0.97
SS18-219ENST00000581570 TRAV30A0A087WSZ9 112 aa8.97□□□□□ -0.97
SS18-219ENST00000581570 IGKV1-17P01599 117 aa8.97□□□□□ -0.97
SS18-219ENST00000581570 HBE1P02100 147 aa8.97□□□□□ -0.97
SS18-219ENST00000581570 RNASE2P10153 161 aaKnown RBP8.97□□□□□ -0.97
SS18-219ENST00000581570 S100GP29377 79 aa8.97□□□□□ -0.97
SS18-219ENST00000581570 OPRK1P41145 380 aa8.97□□□□□ -0.97
SS18-219ENST00000581570 NKX2-1P43699 371 aaPredicted RBP8.97□□□□□ -0.97
SS18-219ENST00000581570 HOXA1P49639 335 aaPredicted RBP8.97□□□□□ -0.97
SS18-219ENST00000581570 SCAND1P57086 179 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms