RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 LINC00479Q96M42 142 aa7.91□□□□□ -1.14
CCDC40-212ENST00000574799 C12orf49Q9H741 205 aa7.91□□□□□ -1.14
CCDC40-212ENST00000574799 JKAMPQ9P055 326 aa7.91□□□□□ -1.14
CCDC40-212ENST00000574799 OR51B2Q9Y5P1 312 aa7.91□□□□□ -1.14
CCDC40-212ENST00000574799 SVEP1Q4LDE5 3571 aa7.91□□□□□ -1.14
CCDC40-212ENST00000574799 H0YJW9 148 aa7.91□□□□□ -1.14
CCDC40-212ENST00000574799 ZNF138P52744 262 aa7.91□□□□□ -1.14
CCDC40-212ENST00000574799 RPS20P60866 119 aaKnown RBP7.91□□□□□ -1.14
CCDC40-212ENST00000574799 TBR1Q16650 682 aa7.91□□□□□ -1.14
CCDC40-212ENST00000574799 BLNKQ8WV28 456 aa7.91□□□□□ -1.14
CCDC40-212ENST00000574799 AMMECR1Q9Y4X0 333 aaPredicted RBP7.91□□□□□ -1.14
CCDC40-212ENST00000574799 A0A1W2PRE2 83 aa7.9□□□□□ -1.14
CCDC40-212ENST00000574799 NMUP48645 174 aa7.9□□□□□ -1.14
CCDC40-212ENST00000574799 ZNF718Q3SXZ3 478 aa7.9□□□□□ -1.14
CCDC40-212ENST00000574799 SPINK14Q6IE38 97 aa7.9□□□□□ -1.14
CCDC40-212ENST00000574799 BHLHA15Q7RTS1 189 aaPredicted RBP7.9□□□□□ -1.14
CCDC40-212ENST00000574799 TCF24Q7RTU0 167 aa7.9□□□□□ -1.14
CCDC40-212ENST00000574799 TCF19Q9Y242 345 aa7.9□□□□□ -1.14
CCDC40-212ENST00000574799 F11RQ9Y624 299 aaKnown RBP7.9□□□□□ -1.14
CCDC40-212ENST00000574799 LY96Q9Y6Y9 160 aa7.9□□□□□ -1.14
CCDC40-212ENST00000574799 PMS2P5A8MQ11 134 aa7.9□□□□□ -1.14
CCDC40-212ENST00000574799 LIPFP07098 398 aa7.9□□□□□ -1.14
CCDC40-212ENST00000574799 COL8A2P25067 703 aa7.9□□□□□ -1.14
CCDC40-212ENST00000574799 FOLR3P41439 243 aa7.9□□□□□ -1.14
CCDC40-212ENST00000574799 LINC00173Q6ZV60 143 aa7.9□□□□□ -1.14
CCDC40-212ENST00000574799 Q8IYB0 196 aa7.9□□□□□ -1.14
CCDC40-212ENST00000574799 SLC25A40Q8TBP6 338 aa7.9□□□□□ -1.14
CCDC40-212ENST00000574799 OOEPA6NGQ2 149 aa7.9□□□□□ -1.15
CCDC40-212ENST00000574799 COX7A2P2O60397 106 aa7.9□□□□□ -1.15
CCDC40-212ENST00000574799 SLC25A5P05141 298 aaKnown RBP7.9□□□□□ -1.15
CCDC40-212ENST00000574799 NUP35Q8NFH5 326 aa7.9□□□□□ -1.15
CCDC40-212ENST00000574799 FAM168AQ92567 244 aa7.9□□□□□ -1.15
CCDC40-212ENST00000574799 PERPQ96FX8 193 aa7.9□□□□□ -1.15
CCDC40-212ENST00000574799 ADTRPQ96IZ2 230 aa7.9□□□□□ -1.15
CCDC40-212ENST00000574799 SIGMAR1Q99720 223 aa7.9□□□□□ -1.15
CCDC40-212ENST00000574799 PCNX2A6NKB5 2137 aa7.9□□□□□ -1.15
CCDC40-212ENST00000574799 CEP250Q9BV73 2442 aa7.9□□□□□ -1.15
CCDC40-212ENST00000574799 A0A0G2JLM5 398 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 ZNF503-AS2A6NEH8 195 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 ARR3P36575 388 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 SCGB2A2Q13296 93 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 RBMXL3Q8N7X1 1067 aaKnown RBP7.89□□□□□ -1.15
CCDC40-212ENST00000574799 OR52E5Q8NH55 327 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 CLUHP3Q96NS8 147 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 THYN1Q9P016 225 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.89□□□□□ -1.15
CCDC40-212ENST00000574799 WISP2O76076 250 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 PLAUP00749 431 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 IGLV2-14P01704 120 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 IGLC1P0CG04 106 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 AREGP15514 252 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 SEC11AP67812 179 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 C6orf15Q6UXA7 325 aaPredicted RBP7.89□□□□□ -1.15
CCDC40-212ENST00000574799 ZNF497Q6ZNH5 498 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 FAM173AQ9BQD7 235 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 COMMD5Q9GZQ3 224 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 FGF23Q9GZV9 251 aaPredicted RBP7.89□□□□□ -1.15
CCDC40-212ENST00000574799 ABCA1O95477 2261 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 TFF1P04155 84 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 GCSHP23434 173 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 CSN1S1P47710 185 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 HBBP68871 147 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 OR1C1Q15619 314 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 VWC2Q2TAL6 325 aa7.89□□□□□ -1.15
CCDC40-212ENST00000574799 SNRNP40Q96DI7 357 aaKnown RBP7.89□□□□□ -1.15
CCDC40-212ENST00000574799 OTOGLQ3ZCN5 2332 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.88□□□□□ -1.15
CCDC40-212ENST00000574799 LINC00473A8K010 186 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 P01737 135 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 FCER1GP30273 86 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 ZNF826PQ6ZT77 177 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 TMEM140Q9NV12 185 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 RBPJQ06330 500 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 TUSC5Q8IXB3 177 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 GRAMD2BQ96HH9 432 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 APC2O95996 2303 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 TRBV6-6A0A0A6YYG2 114 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 PPIAL4CA0A0B4J2A2 164 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 SERTM2A0A1B0GWG4 89 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 NBEAP1P0C6P0 100 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 C8orf88P0DMB2 117 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 PPIAL4GP0DN37 164 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 AZU1P20160 251 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 ARG2P78540 354 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 SRSF6Q13247 344 aaKnown RBP7.88□□□□□ -1.15
CCDC40-212ENST00000574799 ATP1A1-AS1Q5TC04 95 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 C11orf52Q96A22 123 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 DNAJC13O75165 2243 aa7.88□□□□□ -1.15
CCDC40-212ENST00000574799 A1L4Q6 167 aa7.87□□□□□ -1.15
CCDC40-212ENST00000574799 KIR3DS1Q14943 382 aa7.87□□□□□ -1.15
CCDC40-212ENST00000574799 DCTN5Q9BTE1 182 aa7.87□□□□□ -1.15
CCDC40-212ENST00000574799 ICE1Q9Y2F5 2266 aa7.87□□□□□ -1.15
CCDC40-212ENST00000574799 TRAV3A0A0B4J244 114 aa7.87□□□□□ -1.15
CCDC40-212ENST00000574799 LOC389332A0A1B0GUA5 103 aa7.87□□□□□ -1.15
CCDC40-212ENST00000574799 C2orf70A6NJV1 201 aa7.87□□□□□ -1.15
CCDC40-212ENST00000574799 A8MWL6 223 aa7.87□□□□□ -1.15
CCDC40-212ENST00000574799 WNT9BO14905 357 aa7.87□□□□□ -1.15
CCDC40-212ENST00000574799 FOXG1P55316 489 aaPredicted RBP7.87□□□□□ -1.15
CCDC40-212ENST00000574799 ZNF788Q6ZQV5 615 aa7.87□□□□□ -1.15
CCDC40-212ENST00000574799 PKIBQ9C010 78 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms