RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 CENPOQ9BU64 300 aa8.25□□□□□ -1.09
CLK3-222ENST00000568232 C1QTNF4Q9BXJ3 329 aa8.25□□□□□ -1.09
CLK3-222ENST00000568232 KRTAP1-5Q9BYS1 174 aa8.25□□□□□ -1.09
CLK3-222ENST00000568232 DCSTAMPQ9H295 470 aa8.25□□□□□ -1.09
CLK3-222ENST00000568232 NSG2Q9Y328 171 aa8.25□□□□□ -1.09
CLK3-222ENST00000568232 PUS1Q9Y606 427 aaKnown RBP eCLIP8.25□□□□□ -1.09
CLK3-222ENST00000568232 A0A1B0GU03 582 aa8.24□□□□□ -1.09
CLK3-222ENST00000568232 MT-CO2P00403 227 aa8.24□□□□□ -1.09
CLK3-222ENST00000568232 HPRT1P00492 218 aa8.24□□□□□ -1.09
CLK3-222ENST00000568232 GADD45AP24522 165 aa8.24□□□□□ -1.09
CLK3-222ENST00000568232 PSMA1P25786 263 aaKnown RBP8.24□□□□□ -1.09
CLK3-222ENST00000568232 FXYD7P58549 80 aa8.24□□□□□ -1.09
CLK3-222ENST00000568232 ZNF846Q147U1 533 aa8.24□□□□□ -1.09
CLK3-222ENST00000568232 SPHARQ15513 63 aa8.24□□□□□ -1.09
CLK3-222ENST00000568232 THOC7Q6I9Y2 204 aaKnown RBP8.24□□□□□ -1.09
CLK3-222ENST00000568232 C15orf53Q8NAA6 179 aa8.24□□□□□ -1.09
CLK3-222ENST00000568232 SECTM1Q8WVN6 248 aa8.24□□□□□ -1.09
CLK3-222ENST00000568232 MGLLQ99685 303 aa8.24□□□□□ -1.09
CLK3-222ENST00000568232 LINC00588Q9Y4M8 146 aa8.24□□□□□ -1.09
CLK3-222ENST00000568232 RBFOX2O43251 390 aaKnown RBP eCLIP8.23□□□□□ -1.09
CLK3-222ENST00000568232 GNG7O60262 68 aa8.23□□□□□ -1.09
CLK3-222ENST00000568232 CTXN2P0C2S0 81 aa8.23□□□□□ -1.09
CLK3-222ENST00000568232 ZNF182P17025 639 aaPredicted RBP8.23□□□□□ -1.09
CLK3-222ENST00000568232 NUTF2P61970 127 aaKnown RBP8.23□□□□□ -1.09
CLK3-222ENST00000568232 MLLT11Q13015 90 aaPredicted RBP8.23□□□□□ -1.09
CLK3-222ENST00000568232 OXA1LQ15070 435 aa8.23□□□□□ -1.09
CLK3-222ENST00000568232 TMEM91Q6ZNR0 172 aa8.23□□□□□ -1.09
CLK3-222ENST00000568232 OR1P1Q8NH06 330 aa8.23□□□□□ -1.09
CLK3-222ENST00000568232 PINX1Q96BK5 328 aaKnown RBP8.23□□□□□ -1.09
CLK3-222ENST00000568232 TXN2Q99757 166 aa8.23□□□□□ -1.09
CLK3-222ENST00000568232 OR51B2Q9Y5P1 312 aa8.23□□□□□ -1.09
CLK3-222ENST00000568232 RFNGQ9Y644 331 aa8.23□□□□□ -1.09
CLK3-222ENST00000568232 RPS10-NUDT3A0A1W2PQS6 291 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 SMIM9A6NGZ8 99 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 DBX1A6NMT0 343 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 H3BMM0 161 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 NUDT3O95989 172 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 FGF2P09038 288 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 PTHLHP12272 177 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 BTF3P20290 206 aaKnown RBP8.22□□□□□ -1.09
CLK3-222ENST00000568232 NPPCP23582 126 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 DTYMKP23919 212 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 FGF9P31371 208 aaPredicted RBP8.22□□□□□ -1.09
CLK3-222ENST00000568232 S100A5P33763 92 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 P2RY1P47900 373 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 RPS25P62851 125 aaKnown RBP8.22□□□□□ -1.09
CLK3-222ENST00000568232 DHRS2Q13268 280 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 CNIH2Q6PI25 160 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 GSG1LQ6UXU4 331 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 OR51H1Q8NH63 302 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 DYNC2LI1Q8TCX1 351 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 MOB3AQ96BX8 217 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 PPP1R14BQ96C90 147 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 NAA50Q9GZZ1 169 aaKnown RBP8.22□□□□□ -1.09
CLK3-222ENST00000568232 TMEM231Q9H6L2 316 aa8.22□□□□□ -1.09
CLK3-222ENST00000568232 CCDC59Q9P031 241 aaKnown RBP8.22□□□□□ -1.09
CLK3-222ENST00000568232 YTHDF2Q9Y5A9 579 aaKnown RBP8.22□□□□□ -1.09
CLK3-222ENST00000568232 TEX48A0A1B0GUV7 120 aa8.21□□□□□ -1.1
CLK3-222ENST00000568232 HELTA6NFD8 242 aa8.21□□□□□ -1.1
CLK3-222ENST00000568232 IGKV3-20P01619 116 aa8.21□□□□□ -1.1
CLK3-222ENST00000568232 HSMCR30P0CW71 290 aa8.21□□□□□ -1.1
CLK3-222ENST00000568232 PPP5CP53041 499 aa8.21□□□□□ -1.1
CLK3-222ENST00000568232 DAD1P61803 113 aa8.21□□□□□ -1.1
CLK3-222ENST00000568232 TRAM1Q15629 374 aa8.21□□□□□ -1.1
CLK3-222ENST00000568232 CDNFQ49AH0 187 aa8.21□□□□□ -1.1
CLK3-222ENST00000568232 ZNF600Q6ZNG1 722 aa8.21□□□□□ -1.1
CLK3-222ENST00000568232 C17orf77Q96MU5 243 aa8.21□□□□□ -1.1
CLK3-222ENST00000568232 PLEKHA2Q9HB19 425 aa8.21□□□□□ -1.1
CLK3-222ENST00000568232 SSR3Q9UNL2 185 aa8.21□□□□□ -1.1
CLK3-222ENST00000568232 V9GY05 133 aa8.21□□□□□ -1.1
CLK3-222ENST00000568232 A0A1W2PS18 150 aa8.2□□□□□ -1.1
CLK3-222ENST00000568232 CCL18P55774 89 aa8.2□□□□□ -1.1
CLK3-222ENST00000568232 DEFB1P60022 68 aa8.2□□□□□ -1.1
CLK3-222ENST00000568232 SPCS2Q15005 226 aa8.2□□□□□ -1.1
CLK3-222ENST00000568232 MCFD2Q8NI22 146 aa8.2□□□□□ -1.1
CLK3-222ENST00000568232 NUDCD2Q8WVJ2 157 aa8.2□□□□□ -1.1
CLK3-222ENST00000568232 UFD1Q92890 307 aa8.2□□□□□ -1.1
CLK3-222ENST00000568232 TMEM56Q96MV1 263 aa8.2□□□□□ -1.1
CLK3-222ENST00000568232 ARPC5LQ9BPX5 153 aa8.2□□□□□ -1.1
CLK3-222ENST00000568232 Q9H8V8 135 aa8.2□□□□□ -1.1
CLK3-222ENST00000568232 NDUFB11Q9NX14 153 aa8.2□□□□□ -1.1
CLK3-222ENST00000568232 ANXA10Q9UJ72 324 aa8.2□□□□□ -1.1
CLK3-222ENST00000568232 LOC102723971A0A1B0GUV8 181 aa8.19□□□□□ -1.1
CLK3-222ENST00000568232 MARCH11A6NNE9 402 aa8.19□□□□□ -1.1
CLK3-222ENST00000568232 KRASP01116 189 aa8.19□□□□□ -1.1
CLK3-222ENST00000568232 CRYBB3P26998 211 aa8.19□□□□□ -1.1
CLK3-222ENST00000568232 FCGR2CP31995 323 aa8.19□□□□□ -1.1
CLK3-222ENST00000568232 VBP1P61758 197 aa8.19□□□□□ -1.1
CLK3-222ENST00000568232 FABP5Q01469 135 aa8.19□□□□□ -1.1
CLK3-222ENST00000568232 CATR1Q13166 79 aa8.19□□□□□ -1.1
CLK3-222ENST00000568232 GDF5OSQ5U4N7 250 aa8.19□□□□□ -1.1
CLK3-222ENST00000568232 ZNF818PQ6ZRF7 136 aa8.19□□□□□ -1.1
CLK3-222ENST00000568232 SSX7Q7RTT5 188 aa8.19□□□□□ -1.1
CLK3-222ENST00000568232 AP3S1Q92572 193 aa8.19□□□□□ -1.1
CLK3-222ENST00000568232 SLC5A7Q9GZV3 580 aa8.19□□□□□ -1.1
CLK3-222ENST00000568232 SSX5O60225 188 aa8.18□□□□□ -1.1
CLK3-222ENST00000568232 TMEM50AO95807 157 aa8.18□□□□□ -1.1
CLK3-222ENST00000568232 G6PCP35575 357 aa8.18□□□□□ -1.1
CLK3-222ENST00000568232 RORCP51449 518 aa8.18□□□□□ -1.1
CLK3-222ENST00000568232 OR10A3P58181 314 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms