RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 ABHD5Q8WTS1 349 aa10.05□□□□□ -0.8
USP3-213ENST00000559711 SLC25A33Q9BSK2 321 aa10.05□□□□□ -0.8
USP3-213ENST00000559711 MRPL36Q9P0J6 103 aaKnown RBP10.05□□□□□ -0.8
USP3-213ENST00000559711 ANKRD17O75179 2603 aaKnown RBP10.05□□□□□ -0.8
USP3-213ENST00000559711 NAV3Q8IVL0 2385 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 IGKV1D-37A0A075B6S9 117 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 IGHV7-81A0A0B4J1V7 117 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 A0A0U1RQK1 487 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 J3QLI3 93 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 HMGB3O15347 200 aaKnown RBP10.04□□□□□ -0.8
USP3-213ENST00000559711 AVPP01185 164 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 SRP19P09132 144 aaKnown RBP10.04□□□□□ -0.8
USP3-213ENST00000559711 DEFA4P12838 97 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 RND2P52198 227 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 NDPQ00604 133 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 GUCA2BQ16661 112 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 KLF17Q5JT82 389 aaPredicted RBP10.04□□□□□ -0.8
USP3-213ENST00000559711 ASPHD1Q5U4P2 390 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 ATRAIDQ6UW56 229 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 RBMS3Q6XE24 437 aaKnown RBP10.04□□□□□ -0.8
USP3-213ENST00000559711 CYP2G1PQ6ZSU1 146 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 SLC35E3Q7Z769 313 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 TTC9CQ8N5M4 171 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 RXFP4Q8TDU9 374 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 FAM103A1Q9BTL3 118 aaKnown RBP10.04□□□□□ -0.8
USP3-213ENST00000559711 C19orf24Q9BVV8 132 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 APCP25054 2843 aa10.04□□□□□ -0.8
USP3-213ENST00000559711 TCRBV4S1A1TA0A5B7 111 aa10.03□□□□□ -0.8
USP3-213ENST00000559711 RNF223E7ERA6 249 aa10.03□□□□□ -0.8
USP3-213ENST00000559711 I3L2K1 104 aa10.03□□□□□ -0.8
USP3-213ENST00000559711 MT-CO2P00403 227 aa10.03□□□□□ -0.8
USP3-213ENST00000559711 IFNA1P01562 189 aa10.03□□□□□ -0.8
USP3-213ENST00000559711 IGHV3-48P01763 117 aa10.03□□□□□ -0.8
USP3-213ENST00000559711 STAG3L2P0CL84 134 aa10.03□□□□□ -0.8
USP3-213ENST00000559711 STAG3L3P0CL85 134 aa10.03□□□□□ -0.8
USP3-213ENST00000559711 EGR2P11161 476 aaPredicted RBP10.03□□□□□ -0.8
USP3-213ENST00000559711 TAGLN2P37802 199 aaKnown RBP10.03□□□□□ -0.8
USP3-213ENST00000559711 RHOBP62745 196 aa10.03□□□□□ -0.8
USP3-213ENST00000559711 Q5PR19 223 aa10.03□□□□□ -0.8
USP3-213ENST00000559711 RASL11BQ9BPW5 248 aa10.03□□□□□ -0.8
USP3-213ENST00000559711 TMPRSS5Q9H3S3 457 aa10.03□□□□□ -0.8
USP3-213ENST00000559711 VAX2Q9UIW0 290 aa10.03□□□□□ -0.8
USP3-213ENST00000559711 CSMD2Q7Z408 3487 aa10.03□□□□□ -0.8
USP3-213ENST00000559711 SVEP1Q4LDE5 3571 aa10.03□□□□□ -0.8
USP3-213ENST00000559711 ZFP92A6NM28 416 aa10.02□□□□□ -0.8
USP3-213ENST00000559711 NDUFS6O75380 124 aaKnown RBP10.02□□□□□ -0.8
USP3-213ENST00000559711 GATA2P23769 480 aaPredicted RBP10.02□□□□□ -0.8
USP3-213ENST00000559711 PSMB3P49720 205 aa10.02□□□□□ -0.8
USP3-213ENST00000559711 SELENOTP62341 195 aa10.02□□□□□ -0.8
USP3-213ENST00000559711 C22orf15Q8WYQ4 148 aa10.02□□□□□ -0.8
USP3-213ENST00000559711 RBM14Q96PK6 669 aaKnown RBP10.02□□□□□ -0.8
USP3-213ENST00000559711 TRGV9Q99603 122 aa10.02□□□□□ -0.8
USP3-213ENST00000559711 SEPSECSQ9HD40 501 aaKnown RBP10.02□□□□□ -0.8
USP3-213ENST00000559711 MANBALQ9NQG1 85 aa10.02□□□□□ -0.8
USP3-213ENST00000559711 PSMB11A5LHX3 300 aa10.02□□□□□ -0.81
USP3-213ENST00000559711 BPIFB3P59826 476 aa10.02□□□□□ -0.81
USP3-213ENST00000559711 KRTAP1-3Q8IUG1 177 aa10.02□□□□□ -0.81
USP3-213ENST00000559711 K7EIM0 57 aa10.01□□□□□ -0.81
USP3-213ENST00000559711 SNAPINO95295 136 aa10.01□□□□□ -0.81
USP3-213ENST00000559711 CXorf1O96002 111 aa10.01□□□□□ -0.81
USP3-213ENST00000559711 TGFAP01135 160 aa10.01□□□□□ -0.81
USP3-213ENST00000559711 FBP1P09467 338 aa10.01□□□□□ -0.81
USP3-213ENST00000559711 OR5G3P0C626 314 aa10.01□□□□□ -0.81
USP3-213ENST00000559711 IGHV4-31P0DP07 118 aa10.01□□□□□ -0.81
USP3-213ENST00000559711 ZNF90Q03938 601 aa10.01□□□□□ -0.81
USP3-213ENST00000559711 SOHLH1Q5JUK2 328 aa10.01□□□□□ -0.81
USP3-213ENST00000559711 C5orf56Q8N8D9 126 aa10.01□□□□□ -0.81
USP3-213ENST00000559711 OR4X1Q8NH49 305 aa10.01□□□□□ -0.81
USP3-213ENST00000559711 GATAD1Q8WUU5 269 aa10.01□□□□□ -0.81
USP3-213ENST00000559711 FANCD2OSQ96PS1 177 aa10.01□□□□□ -0.81
USP3-213ENST00000559711 HSPB9Q9BQS6 159 aa10.01□□□□□ -0.81
USP3-213ENST00000559711 NKX6-2Q9C056 277 aaPredicted RBP10.01□□□□□ -0.81
USP3-213ENST00000559711 TNFRSF19Q9NS68 423 aa10.01□□□□□ -0.81
USP3-213ENST00000559711 FUT9Q9Y231 359 aa10.01□□□□□ -0.81
USP3-213ENST00000559711 IGLV11-55A0A075B6I3 123 aa10□□□□□ -0.81
USP3-213ENST00000559711 KLK9Q2XQG4 91 aa10□□□□□ -0.81
USP3-213ENST00000559711 FAM78BQ5VT40 261 aa10□□□□□ -0.81
USP3-213ENST00000559711 SPATA31B1PQ5VZV4 182 aa10□□□□□ -0.81
USP3-213ENST00000559711 HIST2H2BCQ6DN03 193 aa10□□□□□ -0.81
USP3-213ENST00000559711 SPNS3Q6ZMD2 512 aa10□□□□□ -0.81
USP3-213ENST00000559711 CYB561D1Q8N8Q1 229 aa10□□□□□ -0.81
USP3-213ENST00000559711 MAPK1IP1LQ8NDC0 245 aa10□□□□□ -0.81
USP3-213ENST00000559711 SGMS2Q8NHU3 365 aa10□□□□□ -0.81
USP3-213ENST00000559711 NANPQ8TBE9 248 aa10□□□□□ -0.81
USP3-213ENST00000559711 TMEM37Q8WXS4 190 aa10□□□□□ -0.81
USP3-213ENST00000559711 RNF2Q99496 336 aa10□□□□□ -0.81
USP3-213ENST00000559711 SSX3Q99909 188 aa10□□□□□ -0.81
USP3-213ENST00000559711 DNAJC4Q9NNZ3 241 aa10□□□□□ -0.81
USP3-213ENST00000559711 KLK9Q9UKQ9 250 aa10□□□□□ -0.81
USP3-213ENST00000559711 MOB4Q9Y3A3 225 aa10□□□□□ -0.81
USP3-213ENST00000559711 SOX21Q9Y651 276 aaPredicted RBP10□□□□□ -0.81
USP3-213ENST00000559711 IGHV3-21A0A0B4J1V1 117 aa9.99□□□□□ -0.81
USP3-213ENST00000559711 ARL14EPLP0DKL9 152 aa9.99□□□□□ -0.81
USP3-213ENST00000559711 CD81P60033 236 aa9.99□□□□□ -0.81
USP3-213ENST00000559711 MEF2BQ02080 365 aaPredicted RBP9.99□□□□□ -0.81
USP3-213ENST00000559711 Q96MF0 132 aa9.99□□□□□ -0.81
USP3-213ENST00000559711 TMEM68Q96MH6 324 aa9.99□□□□□ -0.81
USP3-213ENST00000559711 A6NDX4 124 aa9.99□□□□□ -0.81
USP3-213ENST00000559711 AMY1AP04745 511 aa9.99□□□□□ -0.81
USP3-213ENST00000559711 IGLC1P0CG04 106 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms