RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 IGLV3-9A0A075B6K5 115 aa13.25□□□□□ -0.29
SHMT2-232ENST00000557487 TRAV17A0A0B4J275 112 aa13.25□□□□□ -0.29
SHMT2-232ENST00000557487 IGFL2Q6UWQ7 119 aa13.25□□□□□ -0.29
SHMT2-232ENST00000557487 APOA2P02652 100 aa13.25□□□□□ -0.29
SHMT2-232ENST00000557487 HIST1H1EP10412 219 aaKnown RBP13.25□□□□□ -0.29
SHMT2-232ENST00000557487 TBR1Q16650 682 aa13.25□□□□□ -0.29
SHMT2-232ENST00000557487 CYB5R2Q6BCY4 276 aa13.25□□□□□ -0.29
SHMT2-232ENST00000557487 ITLN1Q8WWA0 313 aa13.25□□□□□ -0.29
SHMT2-232ENST00000557487 TIMM23BQ5SRD1 257 aa13.24□□□□□ -0.29
SHMT2-232ENST00000557487 ATP1A1-AS1Q5TC04 95 aa13.24□□□□□ -0.29
SHMT2-232ENST00000557487 ZNF833PQ6ZTB9 187 aa13.24□□□□□ -0.29
SHMT2-232ENST00000557487 C11orf42Q8N5U0 333 aa13.24□□□□□ -0.29
SHMT2-232ENST00000557487 STXBP6Q8NFX7 210 aa13.24□□□□□ -0.29
SHMT2-232ENST00000557487 OR9G1Q8NH87 305 aa13.24□□□□□ -0.29
SHMT2-232ENST00000557487 NDUFA4L2Q9NRX3 87 aa13.24□□□□□ -0.29
SHMT2-232ENST00000557487 hADV38S2A0JD32 116 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 PEX7O00628 323 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 COX7A2P2O60397 106 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 HSBP1O75506 76 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 SAA1P0DJI8 122 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-232ENST00000557487 MYOD1P15172 320 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 SUB1P53999 127 aaKnown RBP eCLIP13.23□□□□□ -0.292e-7■■■□□ 15.5
SHMT2-232ENST00000557487 SLC35B1P78383 322 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 MMDQ15546 238 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 MSMPQ1L6U9 139 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 SPACA3Q8IXA5 215 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 VSTM2AQ8TAG5 236 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 PAXXQ9BUH6 204 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 ZNF430Q9H8G1 570 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-232ENST00000557487 SOX21Q9Y651 276 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-232ENST00000557487 TRAV9-2A0A087WT02 112 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 SIAH2O43255 324 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 SLAQ13239 276 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 UTF1Q5T230 341 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 C10orf113Q5VZT2 155 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 MOB3BQ86TA1 216 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 ZNF329Q86UD4 541 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 GAFA1Q96PS6 74 aa13.23□□□□□ -0.29
SHMT2-232ENST00000557487 CACNA1GO43497 2377 aa13.22□□□□□ -0.29
SHMT2-232ENST00000557487 YLPM1P49750 1951 aaKnown RBP13.22□□□□□ -0.29
SHMT2-232ENST00000557487 MBD3L4A6NDZ8 208 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-232ENST00000557487 MBD3L3A6NE82 208 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-232ENST00000557487 MBD3L5A6NJ08 208 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-232ENST00000557487 SRRM4A7MD48 611 aaKnown RBP13.22□□□□□ -0.29
SHMT2-232ENST00000557487 SPRY3O43610 288 aa13.22□□□□□ -0.29
SHMT2-232ENST00000557487 TNFSF4P23510 183 aa13.22□□□□□ -0.29
SHMT2-232ENST00000557487 GATA2P23769 480 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-232ENST00000557487 CA7P43166 264 aa13.22□□□□□ -0.29
SHMT2-232ENST00000557487 MFAP2P55001 183 aa13.22□□□□□ -0.29
SHMT2-232ENST00000557487 RPL8P62917 257 aaKnown RBP13.22□□□□□ -0.29
SHMT2-232ENST00000557487 TMEM177Q53S58 311 aa13.22□□□□□ -0.29
SHMT2-232ENST00000557487 FAM71F2Q6NXP2 309 aa13.22□□□□□ -0.29
SHMT2-232ENST00000557487 ZNF788Q6ZQV5 615 aa13.22□□□□□ -0.29
SHMT2-232ENST00000557487 OR8B3Q8NGG8 313 aa13.22□□□□□ -0.29
SHMT2-232ENST00000557487 MBD3L2Q8NHZ7 208 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-232ENST00000557487 OR8B2Q96RD0 313 aa13.22□□□□□ -0.29
SHMT2-232ENST00000557487 LINC00312Q9Y6C7 94 aa13.22□□□□□ -0.29
SHMT2-232ENST00000557487 IGKV1-16P04430 117 aa13.21□□□□□ -0.29
SHMT2-232ENST00000557487 NTF3P20783 257 aa13.21□□□□□ -0.29
SHMT2-232ENST00000557487 TSPOP30536 169 aa13.21□□□□□ -0.29
SHMT2-232ENST00000557487 GNG10P50151 68 aa13.21□□□□□ -0.29
SHMT2-232ENST00000557487 DMRTA1Q5VZB9 504 aa13.21□□□□□ -0.29
SHMT2-232ENST00000557487 THAP8Q8NA92 274 aa13.21□□□□□ -0.29
SHMT2-232ENST00000557487 NUP35Q8NFH5 326 aa13.21□□□□□ -0.29
SHMT2-232ENST00000557487 CLEC7AQ9BXN2 247 aa13.21□□□□□ -0.29
SHMT2-232ENST00000557487 GAL3ST2Q9H3Q3 398 aa13.21□□□□□ -0.29
SHMT2-232ENST00000557487 C1RLQ9NZP8 487 aa13.21□□□□□ -0.29
SHMT2-232ENST00000557487 SSUH2Q9Y2M2 353 aa13.21□□□□□ -0.29
SHMT2-232ENST00000557487 RAXQ9Y2V3 346 aa13.21□□□□□ -0.29
SHMT2-232ENST00000557487 IGHV2-26A0A0B4J1V2 119 aa13.21□□□□□ -0.3
SHMT2-232ENST00000557487 TCRBV4S1A1TA0A5B7 111 aa13.21□□□□□ -0.3
SHMT2-232ENST00000557487 FAM181BA6NEQ2 426 aa13.21□□□□□ -0.3
SHMT2-232ENST00000557487 MEF2CQ06413 473 aaPredicted RBP13.21□□□□□ -0.3
SHMT2-232ENST00000557487 CT83Q5H943 113 aa13.21□□□□□ -0.3
SHMT2-232ENST00000557487 NUDT10Q8NFP7 164 aa13.21□□□□□ -0.3
SHMT2-232ENST00000557487 TMEM167AQ8TBQ9 72 aa13.21□□□□□ -0.3
SHMT2-232ENST00000557487 TMEM190Q8WZ59 177 aa13.21□□□□□ -0.3
SHMT2-232ENST00000557487 NUDT11Q96G61 164 aa13.21□□□□□ -0.3
SHMT2-232ENST00000557487 ALKBH7Q9BT30 221 aaPredicted RBP13.21□□□□□ -0.3
SHMT2-232ENST00000557487 ZNF355PQ9NSJ1 428 aa13.21□□□□□ -0.3
SHMT2-232ENST00000557487 M0R1B8 84 aa13.2□□□□□ -0.3
SHMT2-232ENST00000557487 UBE2G1P62253 170 aa13.2□□□□□ -0.3
SHMT2-232ENST00000557487 TNFAIP6P98066 277 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-232ENST00000557487 SPRNQ5BIV9 151 aa13.2□□□□□ -0.3
SHMT2-232ENST00000557487 TEX36Q5VZQ5 186 aa13.2□□□□□ -0.3
SHMT2-232ENST00000557487 FAM19A2Q8N3H0 131 aa13.2□□□□□ -0.3
SHMT2-232ENST00000557487 STPG4Q8N801 248 aa13.2□□□□□ -0.3
SHMT2-232ENST00000557487 OR2D3Q8NGH3 330 aa13.2□□□□□ -0.3
SHMT2-232ENST00000557487 OR5AN1Q8NGI8 311 aa13.2□□□□□ -0.3
SHMT2-232ENST00000557487 SNRNP40Q96DI7 357 aaKnown RBP13.2□□□□□ -0.3
SHMT2-232ENST00000557487 HARBI1Q96MB7 349 aa13.2□□□□□ -0.3
SHMT2-232ENST00000557487 A0A1B0GXF2 115 aa13.19□□□□□ -0.3
SHMT2-232ENST00000557487 M0R2Z0 102 aa13.19□□□□□ -0.3
SHMT2-232ENST00000557487 MYCNOSP40205 109 aa13.19□□□□□ -0.3
SHMT2-232ENST00000557487 TNXAQ16473 311 aa13.19□□□□□ -0.3
SHMT2-232ENST00000557487 TNFRSF19Q9NS68 423 aa13.19□□□□□ -0.3
SHMT2-232ENST00000557487 KLF12Q9Y4X4 402 aa13.19□□□□□ -0.3
SHMT2-232ENST00000557487 AKAP13Q12802 2813 aa13.19□□□□□ -0.3
SHMT2-232ENST00000557487 NKX6-3A6NJ46 265 aa13.19□□□□□ -0.3
SHMT2-232ENST00000557487 H0YJW9 148 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms