RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 PIP4P2Q8N4L2 257 aa11.31□□□□□ -0.6
SHMT2-226ENST00000556825 PRKNO60260 465 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-226ENST00000556825 EVI2AP22794 236 aa11.3□□□□□ -0.6
SHMT2-226ENST00000556825 CD27P26842 260 aa11.3□□□□□ -0.6
SHMT2-226ENST00000556825 DSCR4P56555 118 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-226ENST00000556825 RBM11P57052 281 aaKnown RBP11.3□□□□□ -0.6
SHMT2-226ENST00000556825 Q6Q795 121 aa11.3□□□□□ -0.6
SHMT2-226ENST00000556825 CARD19Q96LW7 228 aa11.3□□□□□ -0.6
SHMT2-226ENST00000556825 PCDH15Q96QU1 1955 aa11.3□□□□□ -0.6
SHMT2-226ENST00000556825 LRRK1Q38SD2 2015 aa11.3□□□□□ -0.6
SHMT2-226ENST00000556825 MGST3O14880 152 aa11.29□□□□□ -0.6
SHMT2-226ENST00000556825 FGFRL1Q8N441 504 aa11.29□□□□□ -0.6
SHMT2-226ENST00000556825 ZNF355PQ9NSJ1 428 aa11.29□□□□□ -0.6
SHMT2-226ENST00000556825 GON4LQ3T8J9 2241 aa11.29□□□□□ -0.6
SHMT2-226ENST00000556825 C16orf97H3BN30 126 aa11.29□□□□□ -0.6
SHMT2-226ENST00000556825 ZNF688P0C7X2 276 aa11.29□□□□□ -0.6
SHMT2-226ENST00000556825 CDAP32320 146 aa11.29□□□□□ -0.6
SHMT2-226ENST00000556825 CSN1S1P47710 185 aa11.29□□□□□ -0.6
SHMT2-226ENST00000556825 CXCL12P48061 93 aa11.29□□□□□ -0.6
SHMT2-226ENST00000556825 NMUP48645 174 aa11.29□□□□□ -0.6
SHMT2-226ENST00000556825 HBBP68871 147 aa11.29□□□□□ -0.6
SHMT2-226ENST00000556825 PCSK4Q6UW60 755 aa11.29□□□□□ -0.6
SHMT2-226ENST00000556825 CEND1Q8N111 149 aa11.29□□□□□ -0.6
SHMT2-226ENST00000556825 SMRP1Q8NCR6 262 aa11.29□□□□□ -0.6
SHMT2-226ENST00000556825 EMC6Q9BV81 110 aa11.29□□□□□ -0.6
SHMT2-226ENST00000556825 SIGLEC9Q9Y336 463 aa11.29□□□□□ -0.6
SHMT2-226ENST00000556825 TIMM8BQ9Y5J9 83 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-226ENST00000556825 NCKAP5O14513 1909 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 NPIPB6E9PJ23 425 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 KLK10O43240 276 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 MOSP00540 346 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 ZNF138P52744 262 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 FOXG1P55316 489 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-226ENST00000556825 RRN3P1Q2M238 152 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 PEAR1Q5VY43 1037 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-226ENST00000556825 C6orf15Q6UXA7 325 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-226ENST00000556825 SFTPA2Q8IWL1 248 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 SFTPA1Q8IWL2 248 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 AJUBAQ96IF1 538 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 HSD17B10Q99714 261 aaKnown RBP11.28□□□□□ -0.6
SHMT2-226ENST00000556825 CHAC1Q9BUX1 264 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 ALKBH4Q9NXW9 302 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 ONECUT1Q9UBC0 465 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 TNRC18O15417 2968 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-226ENST00000556825 C2orf16Q68DN1 1984 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 HIGD1CA8MV81 97 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 TGFBR3LH3BV60 316 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 CHEK1O14757 476 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 ZG16O60844 167 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 GLRXP35754 106 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 MPV17P39210 176 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 TCTAP57738 103 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 OR9G1Q8NH87 305 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 SNRNP40Q96DI7 357 aaKnown RBP11.28□□□□□ -0.6
SHMT2-226ENST00000556825 BORCS8Q96FH0 119 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 UBTD1Q9HAC8 227 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 MYO9BQ13459 2157 aa11.28□□□□□ -0.6
SHMT2-226ENST00000556825 CFIP05156 583 aa11.27□□□□□ -0.61
SHMT2-226ENST00000556825 C12orf74Q32Q52 190 aa11.27□□□□□ -0.61
SHMT2-226ENST00000556825 MIC13Q5XKP0 118 aa11.27□□□□□ -0.61
SHMT2-226ENST00000556825 TREML4Q6UXN2 200 aa11.27□□□□□ -0.61
SHMT2-226ENST00000556825 TMEM92Q6UXU6 159 aa11.27□□□□□ -0.61
SHMT2-226ENST00000556825 RBMXL3Q8N7X1 1067 aaKnown RBP11.27□□□□□ -0.61
SHMT2-226ENST00000556825 HEYLQ9NQ87 328 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-226ENST00000556825 H0YIG0 161 aa11.27□□□□□ -0.61
SHMT2-226ENST00000556825 TNFSF11O14788 317 aa11.27□□□□□ -0.61
SHMT2-226ENST00000556825 MYOD1P15172 320 aa11.27□□□□□ -0.61
SHMT2-226ENST00000556825 CD24P25063 80 aa11.27□□□□□ -0.61
SHMT2-226ENST00000556825 DAZAP2Q15038 168 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-226ENST00000556825 RASL10AQ92737 203 aa11.27□□□□□ -0.61
SHMT2-226ENST00000556825 AKIRIN1Q9H9L7 192 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-226ENST00000556825 MDFICQ9P1T7 246 aa11.27□□□□□ -0.61
SHMT2-226ENST00000556825 H0YGG7 62 aa11.26□□□□□ -0.61
SHMT2-226ENST00000556825 PRRG2O14669 202 aa11.26□□□□□ -0.61
SHMT2-226ENST00000556825 TNFSF14O43557 240 aa11.26□□□□□ -0.61
SHMT2-226ENST00000556825 ZIC3O60481 467 aa11.26□□□□□ -0.61
SHMT2-226ENST00000556825 MYF5P13349 255 aa11.26□□□□□ -0.61
SHMT2-226ENST00000556825 MFAP4P55083 255 aa11.26□□□□□ -0.61
SHMT2-226ENST00000556825 MFAP5Q13361 173 aa11.26□□□□□ -0.61
SHMT2-226ENST00000556825 TMEM52BQ4KMG9 183 aa11.26□□□□□ -0.61
SHMT2-226ENST00000556825 FOXL2NBQ6ZUU3 175 aa11.26□□□□□ -0.61
SHMT2-226ENST00000556825 FAM214BQ7L5A3 538 aa11.26□□□□□ -0.61
SHMT2-226ENST00000556825 C1orf162Q8NEQ5 155 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-226ENST00000556825 MRPL32Q9BYC8 188 aaKnown RBP11.26□□□□□ -0.61
SHMT2-226ENST00000556825 DLL3Q9NYJ7 618 aa11.26□□□□□ -0.61
SHMT2-226ENST00000556825 CHD7Q9P2D1 2997 aa11.26□□□□□ -0.61
SHMT2-226ENST00000556825 SNCGO76070 127 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 IGLV2-14P01704 120 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 CSN3P07498 182 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 CLRN1P58418 232 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 EFNB3Q15768 340 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 MGST2Q99735 147 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 FAM90A10PA6NDY2 464 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 FAM90A20PA6NIJ5 464 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 FAM90A7PA6NKC0 464 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 FAM90A22PA8MWA6 464 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 FAM90A12PA8MX19 464 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 FAM90A5PA8MXJ8 464 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 FAM90A23PA8MXZ1 464 aa11.25□□□□□ -0.61
SHMT2-226ENST00000556825 FAM90A15PP0C7V4 464 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms