RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 PARD6GQ9BYG4 376 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-210ENST00000553950 FBXL17Q9UF56 701 aa11.33□□□□□ -0.6
SHMT2-210ENST00000553950 TEP1Q99973 2627 aaKnown RBP11.32□□□□□ -0.6
SHMT2-210ENST00000553950 SMCO3A2RU48 225 aa11.32□□□□□ -0.6
SHMT2-210ENST00000553950 BOLA2-SMG1P6H3BVE0 249 aa11.32□□□□□ -0.6
SHMT2-210ENST00000553950 I3L2K1 104 aa11.32□□□□□ -0.6
SHMT2-210ENST00000553950 K7EIM0 57 aa11.32□□□□□ -0.6
SHMT2-210ENST00000553950 FABP1P07148 127 aa11.32□□□□□ -0.6
SHMT2-210ENST00000553950 MFAP4P55083 255 aa11.32□□□□□ -0.6
SHMT2-210ENST00000553950 NHLH2Q02577 135 aa11.32□□□□□ -0.6
SHMT2-210ENST00000553950 ATP5G2Q06055 141 aa11.32□□□□□ -0.6
SHMT2-210ENST00000553950 RAB31Q13636 194 aa11.32□□□□□ -0.6
SHMT2-210ENST00000553950 VWC2Q2TAL6 325 aa11.32□□□□□ -0.6
SHMT2-210ENST00000553950 ACSM6Q6P461 480 aa11.32□□□□□ -0.6
SHMT2-210ENST00000553950 C9orf62Q8N4C0 152 aa11.32□□□□□ -0.6
SHMT2-210ENST00000553950 TMEM116Q8NCL8 245 aa11.32□□□□□ -0.6
SHMT2-210ENST00000553950 NPVFQ9HCQ7 196 aa11.32□□□□□ -0.6
SHMT2-210ENST00000553950 C21orf62Q9NYP8 219 aa11.32□□□□□ -0.6
SHMT2-210ENST00000553950 DMRT1Q9Y5R6 373 aa11.32□□□□□ -0.6
SHMT2-210ENST00000553950 TRAV30A0A087WSZ9 112 aa11.31□□□□□ -0.6
SHMT2-210ENST00000553950 UBE2L5PA0A1B0GUS4 154 aa11.31□□□□□ -0.6
SHMT2-210ENST00000553950 JTBO76095 146 aa11.31□□□□□ -0.6
SHMT2-210ENST00000553950 PRH1P02810 166 aa11.31□□□□□ -0.6
SHMT2-210ENST00000553950 RAB9AP51151 201 aa11.31□□□□□ -0.6
SHMT2-210ENST00000553950 PROK1P58294 105 aa11.31□□□□□ -0.6
SHMT2-210ENST00000553950 CLINT1Q14677 625 aa11.31□□□□□ -0.6
SHMT2-210ENST00000553950 C19orf35Q6ZS72 473 aa11.31□□□□□ -0.6
SHMT2-210ENST00000553950 TMUB2Q71RG4 321 aa11.31□□□□□ -0.6
SHMT2-210ENST00000553950 TMEM144Q7Z5S9 345 aa11.31□□□□□ -0.6
SHMT2-210ENST00000553950 ZNF329Q86UD4 541 aa11.31□□□□□ -0.6
SHMT2-210ENST00000553950 HAPLN4Q86UW8 402 aa11.31□□□□□ -0.6
SHMT2-210ENST00000553950 OR5AU1Q8NGC0 362 aa11.31□□□□□ -0.6
SHMT2-210ENST00000553950 OR4X1Q8NH49 305 aa11.31□□□□□ -0.6
SHMT2-210ENST00000553950 MYOZ3Q8TDC0 251 aa11.31□□□□□ -0.6
SHMT2-210ENST00000553950 MS4A10Q96PG2 267 aa11.31□□□□□ -0.6
SHMT2-210ENST00000553950 GNG7O60262 68 aa11.3□□□□□ -0.6
SHMT2-210ENST00000553950 CXCL2P19875 107 aa11.3□□□□□ -0.6
SHMT2-210ENST00000553950 RND2P52198 227 aa11.3□□□□□ -0.6
SHMT2-210ENST00000553950 TEPPQ6URK8 271 aa11.3□□□□□ -0.6
SHMT2-210ENST00000553950 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-210ENST00000553950 SCGB1C1Q8TD33 95 aa11.3□□□□□ -0.6
SHMT2-210ENST00000553950 SCARB1Q8WTV0 552 aa11.3□□□□□ -0.6
SHMT2-210ENST00000553950 ACY3Q96HD9 319 aa11.3□□□□□ -0.6
SHMT2-210ENST00000553950 UBE2E2Q96LR5 201 aa11.3□□□□□ -0.6
SHMT2-210ENST00000553950 FNDC4Q9H6D8 234 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-210ENST00000553950 C17orf112F2Z3M2 114 aa11.29□□□□□ -0.6
SHMT2-210ENST00000553950 CLN5O75503 358 aa11.29□□□□□ -0.6
SHMT2-210ENST00000553950 NDUFB8O95169 186 aa11.29□□□□□ -0.6
SHMT2-210ENST00000553950 MDKP21741 143 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-210ENST00000553950 ARL16Q0P5N6 197 aa11.29□□□□□ -0.6
SHMT2-210ENST00000553950 GAMTQ14353 236 aa11.29□□□□□ -0.6
SHMT2-210ENST00000553950 Q56UQ5 140 aa11.29□□□□□ -0.6
SHMT2-210ENST00000553950 SPSB3Q6PJ21 355 aa11.29□□□□□ -0.6
SHMT2-210ENST00000553950 ZNF502Q8TBZ5 544 aa11.29□□□□□ -0.6
SHMT2-210ENST00000553950 WIPF2Q8TF74 440 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-210ENST00000553950 BSCL2Q96G97 398 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-210ENST00000553950 SMIM3Q9BZL3 60 aa11.29□□□□□ -0.6
SHMT2-210ENST00000553950 WDR83OSQ9Y284 106 aa11.29□□□□□ -0.6
SHMT2-210ENST00000553950 MFSD2BA6NFX1 497 aa11.28□□□□□ -0.6
SHMT2-210ENST00000553950 ZFP92A6NM28 416 aa11.28□□□□□ -0.6
SHMT2-210ENST00000553950 NUPL2O15504 423 aaKnown RBP11.28□□□□□ -0.6
SHMT2-210ENST00000553950 TPT1P13693 172 aaKnown RBP11.28□□□□□ -0.6
SHMT2-210ENST00000553950 NKX2-5P52952 324 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-210ENST00000553950 SELENOTP62341 195 aa11.28□□□□□ -0.6
SHMT2-210ENST00000553950 LGALSLQ3ZCW2 172 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-210ENST00000553950 KHDC1LQ5JSQ8 128 aa11.28□□□□□ -0.6
SHMT2-210ENST00000553950 EIF5AL1Q6IS14 154 aaKnown RBP11.28□□□□□ -0.6
SHMT2-210ENST00000553950 SLC51BQ86UW2 128 aa11.28□□□□□ -0.6
SHMT2-210ENST00000553950 ZNF709Q8N972 641 aa11.28□□□□□ -0.6
SHMT2-210ENST00000553950 THAP8Q8NA92 274 aa11.28□□□□□ -0.6
SHMT2-210ENST00000553950 UBAC2Q8NBM4 344 aa11.28□□□□□ -0.6
SHMT2-210ENST00000553950 STOML3Q8TAV4 291 aa11.28□□□□□ -0.6
SHMT2-210ENST00000553950 GNPNAT1Q96EK6 184 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-210ENST00000553950 ZNF471Q9BX82 626 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-210ENST00000553950 CUBNO60494 3623 aa11.28□□□□□ -0.6
SHMT2-210ENST00000553950 CFDP00746 253 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-210ENST00000553950 RPLP1P05386 114 aaKnown RBP11.27□□□□□ -0.61
SHMT2-210ENST00000553950 LGALS1P09382 135 aaKnown RBP11.27□□□□□ -0.61
SHMT2-210ENST00000553950 FGF7P21781 194 aa11.27□□□□□ -0.61
SHMT2-210ENST00000553950 CDX1P47902 265 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-210ENST00000553950 RELQ04864 619 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-210ENST00000553950 OPCMLQ14982 345 aa11.27□□□□□ -0.61
SHMT2-210ENST00000553950 ZNF343Q6P1L6 599 aa11.27□□□□□ -0.61
SHMT2-210ENST00000553950 TREML4Q6UXN2 200 aa11.27□□□□□ -0.61
SHMT2-210ENST00000553950 ZNF491Q8N8L2 437 aa11.27□□□□□ -0.61
SHMT2-210ENST00000553950 C4orf3Q8WVX3 66 aa11.27□□□□□ -0.61
SHMT2-210ENST00000553950 TMEM158Q8WZ71 300 aa11.27□□□□□ -0.61
SHMT2-210ENST00000553950 NPIPB3Q92617 1050 aa11.27□□□□□ -0.61
SHMT2-210ENST00000553950 TRGV9Q99603 122 aa11.27□□□□□ -0.61
SHMT2-210ENST00000553950 WDR61Q9GZS3 305 aaKnown RBP11.27□□□□□ -0.61
SHMT2-210ENST00000553950 KLK15Q9H2R5 256 aa11.27□□□□□ -0.61
SHMT2-210ENST00000553950 TSSC4Q9Y5U2 329 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-210ENST00000553950 JMJD1CQ15652 2540 aa11.27□□□□□ -0.61
SHMT2-210ENST00000553950 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.26□□□□□ -0.61
SHMT2-210ENST00000553950 HAX1O00165 279 aa11.26□□□□□ -0.61
SHMT2-210ENST00000553950 OR10J1P30954 320 aa11.26□□□□□ -0.61
SHMT2-210ENST00000553950 BTNL8Q6UX41 500 aa11.26□□□□□ -0.61
SHMT2-210ENST00000553950 TAF15Q92804 592 aaKnown RBP eCLIP11.26□□□□□ -0.61
SHMT2-210ENST00000553950 CCDC140Q96MF4 163 aa11.26□□□□□ -0.61
SHMT2-210ENST00000553950 LSM4Q9Y4Z0 139 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms