RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 CRB1P82279 1406 aa3.5□□□□□ -1.85
PRKDC-209ENST00000540819 NALCNQ8IZF0 1738 aa3.5□□□□□ -1.85
PRKDC-209ENST00000540819 FANCMQ8IYD8 2048 aa3.49□□□□□ -1.85
PRKDC-209ENST00000540819 RPRD2Q5VT52 1461 aaKnown RBP3.49□□□□□ -1.85
PRKDC-209ENST00000540819 FAM92AA1XBS5 289 aa3.49□□□□□ -1.85
PRKDC-209ENST00000540819 A8MWP6 167 aa3.49□□□□□ -1.85
PRKDC-209ENST00000540819 C1orf196B1AJZ1 125 aa3.49□□□□□ -1.85
PRKDC-209ENST00000540819 ZNF861PO60384 105 aa3.49□□□□□ -1.85
PRKDC-209ENST00000540819 LYZL6O75951 148 aa3.49□□□□□ -1.85
PRKDC-209ENST00000540819 TSPAN19P0C672 248 aa3.49□□□□□ -1.85
PRKDC-209ENST00000540819 ZNF286BP0CG31 522 aa3.49□□□□□ -1.85
PRKDC-209ENST00000540819 LGALS3P17931 250 aaKnown RBP3.49□□□□□ -1.85
PRKDC-209ENST00000540819 KDELR1P24390 212 aa3.49□□□□□ -1.85
PRKDC-209ENST00000540819 SRP14P37108 136 aaKnown RBP3.49□□□□□ -1.85
PRKDC-209ENST00000540819 MEF2BQ02080 365 aaPredicted RBP3.49□□□□□ -1.85
PRKDC-209ENST00000540819 VMA21Q3ZAQ7 101 aa3.49□□□□□ -1.85
PRKDC-209ENST00000540819 LINC01554Q52M75 96 aa3.49□□□□□ -1.85
PRKDC-209ENST00000540819 LYZL2Q7Z4W2 148 aa3.49□□□□□ -1.85
PRKDC-209ENST00000540819 IFT20Q8IY31 132 aa3.49□□□□□ -1.85
PRKDC-209ENST00000540819 OR2T10Q8NGZ9 312 aa3.49□□□□□ -1.85
PRKDC-209ENST00000540819 ARL11Q969Q4 196 aa3.49□□□□□ -1.85
PRKDC-209ENST00000540819 ZNF471Q9BX82 626 aaPredicted RBP3.49□□□□□ -1.85
PRKDC-209ENST00000540819 TCEAL2Q9H3H9 227 aaPredicted RBP3.49□□□□□ -1.85
PRKDC-209ENST00000540819 NAT8BQ9UHF3 227 aa3.49□□□□□ -1.85
PRKDC-209ENST00000540819 MCTS1Q9ULC4 181 aaKnown RBP3.49□□□□□ -1.85
PRKDC-209ENST00000540819 EIF4G3O43432 1585 aaKnown RBP3.49□□□□□ -1.85
PRKDC-209ENST00000540819 BAZ1BQ9UIG0 1483 aaKnown RBP3.48□□□□□ -1.85
PRKDC-209ENST00000540819 FER1L6Q2WGJ9 1857 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 ANKRD31Q8N7Z5 1873 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 CDK5RAP2Q96SN8 1893 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 TNS3Q68CZ2 1445 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 A0A087X0T9 212 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 A0A0D9SEW6 157 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 TRBV7-6A0A0J9YX20 115 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 TMEM212A6NML5 194 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 OR2T1O43869 369 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 IGF2P01344 180 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 IGHV1-69P01742 117 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 NDUFA6P56556 154 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 EIF5AP63241 154 aaKnown RBP3.48□□□□□ -1.85
PRKDC-209ENST00000540819 Q5XG85 94 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 HAGHLQ6PII5 290 aaPredicted RBP3.48□□□□□ -1.85
PRKDC-209ENST00000540819 ZNF322Q6U7Q0 402 aaPredicted RBP3.48□□□□□ -1.85
PRKDC-209ENST00000540819 MSRB3Q8IXL7 192 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 CNEP1R1Q8N9A8 125 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 BPIFB6Q8NFQ5 453 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 TERB2Q8NHR7 220 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 TMEM106AQ96A25 262 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 YPEL2Q96QA6 119 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 TP53RKQ96S44 253 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 LINC00470Q9BZP3 86 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 OR5AC2Q9NZP5 309 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 U3KQK5 164 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 ARHGEF11O15085 1522 aa3.48□□□□□ -1.85
PRKDC-209ENST00000540819 OBSL1O75147 1896 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 GGT3PA6NGU5 568 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 A8MUU9 505 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 J3QR89 54 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 CST7O76096 145 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 LY6HO94772 140 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 KRTAP5-9P26371 169 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 SDC2P34741 201 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 RPS25P62851 125 aaKnown RBP3.47□□□□□ -1.85
PRKDC-209ENST00000540819 UBE2BP63146 152 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 GLYATL3Q5SZD4 288 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 SDIM1Q6ZPB5 146 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 Q6ZQT7 251 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 ZNF695Q8IW36 515 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 RNF175Q8N4F7 328 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 OR51A4Q8NGJ6 313 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 OR8D4Q8NGM9 314 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 CLDND2Q8NHS1 167 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 STAG3L4Q8TBR4 150 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 GFRA4Q9GZZ7 299 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 LPAR5Q9H1C0 372 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 NAT8Q9UHE5 227 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 HS3ST2Q9Y278 367 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 COL27A1Q8IZC6 1860 aaPredicted RBP3.47□□□□□ -1.85
PRKDC-209ENST00000540819 NCAPD3P42695 1498 aa3.47□□□□□ -1.85
PRKDC-209ENST00000540819 TRAPPC8Q9Y2L5 1435 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 PLXNB1O43157 2135 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 ZNF407Q9C0G0 2248 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 IGKV1OR2-108A0A075B7D4 117 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 A0A0B4J2C4 111 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 IGHV1-58A0A0C4DH39 117 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 TMEM256-PLSCR3K7ERE1 68 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 PGLYRP1O75594 196 aaPredicted RBP3.46□□□□□ -1.86
PRKDC-209ENST00000540819 NPYP01303 97 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 CISD3P0C7P0 127 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 SMIM6P0DI80 62 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 ZNF25P17030 456 aaPredicted RBP3.46□□□□□ -1.86
PRKDC-209ENST00000540819 HLA-DMBP28068 263 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 BIKQ13323 160 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 MSMO1Q15800 293 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 NEDD8Q15843 81 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 LCE1FQ5T754 118 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 C4orf22Q6V702 233 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 ZFP2Q6ZN57 461 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 Q6ZR54 194 aa3.46□□□□□ -1.86
PRKDC-209ENST00000540819 ZNF767PQ75MW2 155 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms