RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 MOGAT3Q86VF5 341 aa7.78□□□□□ -1.16
CLIP1-214ENST00000540539 Q8N7P7 452 aa7.78□□□□□ -1.16
CLIP1-214ENST00000540539 F11RQ9Y624 299 aaKnown RBP7.78□□□□□ -1.16
CLIP1-214ENST00000540539 MYO15AQ9UKN7 3530 aa7.78□□□□□ -1.16
CLIP1-214ENST00000540539 E9PLN8 166 aa7.77□□□□□ -1.16
CLIP1-214ENST00000540539 PGLYRP1O75594 196 aaPredicted RBP7.77□□□□□ -1.16
CLIP1-214ENST00000540539 WISP1O95388 367 aa7.77□□□□□ -1.16
CLIP1-214ENST00000540539 NCR2O95944 276 aa7.77□□□□□ -1.16
CLIP1-214ENST00000540539 SLC25A5P05141 298 aaKnown RBP7.77□□□□□ -1.16
CLIP1-214ENST00000540539 CELA2BP08218 269 aaPredicted RBP7.77□□□□□ -1.16
CLIP1-214ENST00000540539 OR5AL1P0C617 328 aa7.77□□□□□ -1.16
CLIP1-214ENST00000540539 BCL3P20749 454 aa7.77□□□□□ -1.16
CLIP1-214ENST00000540539 FOXA3P55318 350 aaPredicted RBP7.77□□□□□ -1.16
CLIP1-214ENST00000540539 PPP1R32Q7Z5V6 425 aa7.77□□□□□ -1.16
CLIP1-214ENST00000540539 DTX1Q86Y01 620 aa7.77□□□□□ -1.16
CLIP1-214ENST00000540539 OR51H1Q8NH63 302 aa7.77□□□□□ -1.16
CLIP1-214ENST00000540539 ATP6V0E2Q8NHE4 81 aa7.77□□□□□ -1.16
CLIP1-214ENST00000540539 ONECUT1Q9UBC0 465 aa7.77□□□□□ -1.16
CLIP1-214ENST00000540539 ATP23Q9Y6H3 246 aa7.77□□□□□ -1.16
CLIP1-214ENST00000540539 DYSFO75923 2080 aa7.77□□□□□ -1.17
CLIP1-214ENST00000540539 TMEM131Q92545 1883 aa7.77□□□□□ -1.17
CLIP1-214ENST00000540539 TRAV5A0A0B4J249 113 aa7.77□□□□□ -1.17
CLIP1-214ENST00000540539 CHEK1O14757 476 aa7.77□□□□□ -1.17
CLIP1-214ENST00000540539 IGKV1-39P01597 117 aa7.77□□□□□ -1.17
CLIP1-214ENST00000540539 IGKV1D-39P04432 117 aa7.77□□□□□ -1.17
CLIP1-214ENST00000540539 CFIP05156 583 aa7.77□□□□□ -1.17
CLIP1-214ENST00000540539 NXPH1P58417 271 aa7.77□□□□□ -1.17
CLIP1-214ENST00000540539 LPAL2Q16609 132 aa7.77□□□□□ -1.17
CLIP1-214ENST00000540539 PIGYQ3MUY2 71 aa7.77□□□□□ -1.17
CLIP1-214ENST00000540539 IBA57Q5T440 356 aaKnown RBP7.77□□□□□ -1.17
CLIP1-214ENST00000540539 FAM168AQ92567 244 aa7.77□□□□□ -1.17
CLIP1-214ENST00000540539 VSTM2LQ96N03 204 aa7.77□□□□□ -1.17
CLIP1-214ENST00000540539 DEPPQ9NTK1 212 aa7.77□□□□□ -1.17
CLIP1-214ENST00000540539 IGLL5B9A064 214 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 PDCD6O75340 191 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 IGKV1-5P01602 117 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 IGHMP01871 453 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 P04436 131 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 ATP5IP56385 69 aaPredicted RBP7.76□□□□□ -1.17
CLIP1-214ENST00000540539 RPS16P62249 146 aaKnown RBP7.76□□□□□ -1.17
CLIP1-214ENST00000540539 ASPHD1Q5U4P2 390 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 Q6ZR03 302 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 H1FNTQ75WM6 255 aaPredicted RBP7.76□□□□□ -1.17
CLIP1-214ENST00000540539 BCL6BQ8N143 479 aaPredicted RBP7.76□□□□□ -1.17
CLIP1-214ENST00000540539 OR5AN1Q8NGI8 311 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 CCL4L1Q8NHW4 92 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 AJUBAQ96IF1 538 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 SSBP3Q9BWW4 388 aaPredicted RBP7.76□□□□□ -1.17
CLIP1-214ENST00000540539 LIN7CQ9NUP9 197 aaKnown RBP7.76□□□□□ -1.17
CLIP1-214ENST00000540539 LOXL2Q9Y4K0 774 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 MUC6Q6W4X9 2439 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 HCFC1P51610 2035 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 C16orf97H3BN30 126 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 KLK10O43240 276 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 SPRY1O43609 319 aaPredicted RBP7.76□□□□□ -1.17
CLIP1-214ENST00000540539 EDDM3BP56851 147 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 MEIG1Q5JSS6 88 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 FNDC7Q5VTL7 733 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 PCP2Q8IVA1 136 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 RAB42Q8N4Z0 105 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 BCORP1Q8N888 145 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 RAB9BQ9NP90 201 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 NHP2Q9NX24 153 aaKnown RBP7.76□□□□□ -1.17
CLIP1-214ENST00000540539 EXPH5Q8NEV8 1989 aa7.76□□□□□ -1.17
CLIP1-214ENST00000540539 PRR19A6NJB7 356 aa7.75□□□□□ -1.17
CLIP1-214ENST00000540539 PMS2P5A8MQ11 134 aa7.75□□□□□ -1.17
CLIP1-214ENST00000540539 GLRXP35754 106 aa7.75□□□□□ -1.17
CLIP1-214ENST00000540539 CAMPP49913 170 aa7.75□□□□□ -1.17
CLIP1-214ENST00000540539 TMEM78Q5T7P6 136 aa7.75□□□□□ -1.17
CLIP1-214ENST00000540539 PEAR1Q5VY43 1037 aaPredicted RBP7.75□□□□□ -1.17
CLIP1-214ENST00000540539 PIP4P1Q86T03 277 aa7.75□□□□□ -1.17
CLIP1-214ENST00000540539 LYZL4Q96KX0 146 aa7.75□□□□□ -1.17
CLIP1-214ENST00000540539 MAP1LC3AQ9H492 121 aa7.75□□□□□ -1.17
CLIP1-214ENST00000540539 TIMM8BQ9Y5J9 83 aaPredicted RBP7.75□□□□□ -1.17
CLIP1-214ENST00000540539 PRKNO60260 465 aaPredicted RBP7.75□□□□□ -1.17
CLIP1-214ENST00000540539 FCN3O75636 299 aa7.75□□□□□ -1.17
CLIP1-214ENST00000540539 CD24P25063 80 aa7.75□□□□□ -1.17
CLIP1-214ENST00000540539 SMCPP49901 116 aaPredicted RBP7.75□□□□□ -1.17
CLIP1-214ENST00000540539 C1orf61Q13536 156 aa7.75□□□□□ -1.17
CLIP1-214ENST00000540539 TMEM8BA6NDV4 472 aa7.74□□□□□ -1.17
CLIP1-214ENST00000540539 K7EMI3 77 aa7.74□□□□□ -1.17
CLIP1-214ENST00000540539 COL8A2P25067 703 aa7.74□□□□□ -1.17
CLIP1-214ENST00000540539 NUP35Q8NFH5 326 aa7.74□□□□□ -1.17
CLIP1-214ENST00000540539 DNAJC30Q96LL9 226 aa7.74□□□□□ -1.17
CLIP1-214ENST00000540539 UBTD1Q9HAC8 227 aa7.74□□□□□ -1.17
CLIP1-214ENST00000540539 DIDO1Q9BTC0 2240 aaKnown RBP7.74□□□□□ -1.17
CLIP1-214ENST00000540539 TEX50A0A1B0GTY4 177 aa7.74□□□□□ -1.17
CLIP1-214ENST00000540539 FAM90A18PA6NE21 464 aa7.74□□□□□ -1.17
CLIP1-214ENST00000540539 FAM90A16PA6NEW6 464 aa7.74□□□□□ -1.17
CLIP1-214ENST00000540539 FAM90A8PA6NJQ4 464 aa7.74□□□□□ -1.17
CLIP1-214ENST00000540539 FAM90A9PA6NNJ1 464 aa7.74□□□□□ -1.17
CLIP1-214ENST00000540539 PATE3B3GLJ2 98 aa7.74□□□□□ -1.17
CLIP1-214ENST00000540539 TUSC2O75896 110 aa7.74□□□□□ -1.17
CLIP1-214ENST00000540539 IFITM1P13164 125 aa7.74□□□□□ -1.17
CLIP1-214ENST00000540539 GCHFRP30047 84 aa7.74□□□□□ -1.17
CLIP1-214ENST00000540539 ZNF138P52744 262 aa7.74□□□□□ -1.17
CLIP1-214ENST00000540539 SUMO3P55854 103 aaPredicted RBP7.74□□□□□ -1.17
CLIP1-214ENST00000540539 DSCR4P56555 118 aaPredicted RBP7.74□□□□□ -1.17
CLIP1-214ENST00000540539 C3orf56Q8N813 242 aa7.74□□□□□ -1.17
CLIP1-214ENST00000540539 FSCN3Q9NQT6 498 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms