RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 OR5C1Q8NGR4 320 aa14.71□□□□□ -0.06
TNFRSF1A-213ENST00000540022 SCARB1Q8WTV0 552 aa14.71□□□□□ -0.06
TNFRSF1A-213ENST00000540022 S100A11P31949 105 aa14.7□□□□□ -0.06
TNFRSF1A-213ENST00000540022 OR2F1Q13607 317 aa14.7□□□□□ -0.06
TNFRSF1A-213ENST00000540022 KIAA0141Q14154 515 aaPredicted RBP14.7□□□□□ -0.06
TNFRSF1A-213ENST00000540022 LGALSLQ3ZCW2 172 aaPredicted RBP14.7□□□□□ -0.06
TNFRSF1A-213ENST00000540022 SLC16A13Q7RTY0 426 aa14.7□□□□□ -0.06
TNFRSF1A-213ENST00000540022 SMIM3Q9BZL3 60 aa14.7□□□□□ -0.06
TNFRSF1A-213ENST00000540022 MRPL36Q9P0J6 103 aaKnown RBP14.7□□□□□ -0.06
TNFRSF1A-213ENST00000540022 A0A1B0GUS0 222 aa14.69□□□□□ -0.06
TNFRSF1A-213ENST00000540022 FAM223BA6NKX1 122 aa14.69□□□□□ -0.06
TNFRSF1A-213ENST00000540022 SCAF4O95104 1147 aaKnown RBP14.69□□□□□ -0.06
TNFRSF1A-213ENST00000540022 GPX4P36969 197 aaPredicted RBP14.69□□□□□ -0.06
TNFRSF1A-213ENST00000540022 HBG1P69891 147 aa14.69□□□□□ -0.06
TNFRSF1A-213ENST00000540022 HBG2P69892 147 aa14.69□□□□□ -0.06
TNFRSF1A-213ENST00000540022 DLK1P80370 383 aa14.69□□□□□ -0.06
TNFRSF1A-213ENST00000540022 ZNF345Q14585 488 aa14.69□□□□□ -0.06
TNFRSF1A-213ENST00000540022 CLINT1Q14677 625 aa14.69□□□□□ -0.06
TNFRSF1A-213ENST00000540022 AWAT1Q58HT5 328 aa14.69□□□□□ -0.06
TNFRSF1A-213ENST00000540022 FAM223AQ8IWN6 122 aa14.69□□□□□ -0.06
TNFRSF1A-213ENST00000540022 KCNRGQ8N5I3 272 aa14.69□□□□□ -0.06
TNFRSF1A-213ENST00000540022 OR4X2Q8NGF9 303 aa14.69□□□□□ -0.06
TNFRSF1A-213ENST00000540022 OR1S2Q8NGQ3 325 aa14.69□□□□□ -0.06
TNFRSF1A-213ENST00000540022 MYOZ3Q8TDC0 251 aa14.69□□□□□ -0.06
TNFRSF1A-213ENST00000540022 CACNG8Q8WXS5 425 aa14.69□□□□□ -0.06
TNFRSF1A-213ENST00000540022 FBXL17Q9UF56 701 aa14.69□□□□□ -0.06
TNFRSF1A-213ENST00000540022 RPS10-NUDT3A0A1W2PQS6 291 aa14.68□□□□□ -0.06
TNFRSF1A-213ENST00000540022 IGHV3-23P01764 117 aa14.68□□□□□ -0.06
TNFRSF1A-213ENST00000540022 ATP5G2Q06055 141 aa14.68□□□□□ -0.06
TNFRSF1A-213ENST00000540022 FOXL1Q12952 345 aa14.68□□□□□ -0.06
TNFRSF1A-213ENST00000540022 LAMTOR1Q6IAA8 161 aa14.68□□□□□ -0.06
TNFRSF1A-213ENST00000540022 ETFRF1Q6IPR1 90 aa14.68□□□□□ -0.06
TNFRSF1A-213ENST00000540022 LILRB2Q8N423 598 aa14.68□□□□□ -0.06
TNFRSF1A-213ENST00000540022 C9orf62Q8N4C0 152 aa14.68□□□□□ -0.06
TNFRSF1A-213ENST00000540022 VN1R17PQ8TDU5 208 aa14.68□□□□□ -0.06
TNFRSF1A-213ENST00000540022 WFDC1Q9HC57 220 aa14.68□□□□□ -0.06
TNFRSF1A-213ENST00000540022 HNRNPCP07910 306 aaKnown RBP eCLIP14.67□□□□□ -0.06
TNFRSF1A-213ENST00000540022 KRTAP10-3P60369 221 aa14.67□□□□□ -0.06
TNFRSF1A-213ENST00000540022 GAMTQ14353 236 aa14.67□□□□□ -0.06
TNFRSF1A-213ENST00000540022 HIST2H2BDQ6DRA6 164 aa14.67□□□□□ -0.06
TNFRSF1A-213ENST00000540022 C11orf44Q8N8P7 122 aa14.67□□□□□ -0.06
TNFRSF1A-213ENST00000540022 USMG5Q96IX5 58 aa14.67□□□□□ -0.06
TNFRSF1A-213ENST00000540022 GGACTQ9BVM4 153 aa14.67□□□□□ -0.06
TNFRSF1A-213ENST00000540022 A0A0D9SG52 128 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 CD28P10747 220 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 ATP6V1FQ16864 119 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 ACSM6Q6P461 480 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 ZNF491Q8N8L2 437 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 ACY3Q96HD9 319 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 CXorf58Q96LI9 332 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 TMEM147Q9BVK8 224 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 C21orf62Q9NYP8 219 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 A0A0G2JLM5 398 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 F8W735 103 aaPredicted RBP14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 IGHV3-11P01762 117 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 RND2P52198 227 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 VWC2Q2TAL6 325 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 TMUB2Q71RG4 321 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 TMEM116Q8NCL8 245 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 ZNF502Q8TBZ5 544 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 NPIPB3Q92617 1050 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 PPP1R14BQ96C90 147 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 SLC35E1Q96K37 410 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 CCDC140Q96MF4 163 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 ARL6Q9H0F7 186 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 UQCC1Q9NVA1 299 aa14.66□□□□□ -0.06
TNFRSF1A-213ENST00000540022 SMCO3A2RU48 225 aa14.65□□□□□ -0.06
TNFRSF1A-213ENST00000540022 FNDC10F2Z333 226 aa14.65□□□□□ -0.06
TNFRSF1A-213ENST00000540022 C3orf56Q8N813 242 aa14.65□□□□□ -0.06
TNFRSF1A-213ENST00000540022 OR4X1Q8NH49 305 aa14.65□□□□□ -0.06
TNFRSF1A-213ENST00000540022 EEF1AKMT3Q96AZ1 226 aa14.65□□□□□ -0.06
TNFRSF1A-213ENST00000540022 ATP5SQ99766 215 aa14.65□□□□□ -0.06
TNFRSF1A-213ENST00000540022 NBEAL1Q6ZS30 2694 aa14.64□□□□□ -0.07
TNFRSF1A-213ENST00000540022 TRRAPQ9Y4A5 3859 aa14.64□□□□□ -0.07
TNFRSF1A-213ENST00000540022 MFAP4P55083 255 aa14.64□□□□□ -0.07
TNFRSF1A-213ENST00000540022 AKR1C1Q04828 323 aa14.64□□□□□ -0.07
TNFRSF1A-213ENST00000540022 TREML4Q6UXN2 200 aa14.64□□□□□ -0.07
TNFRSF1A-213ENST00000540022 UBAC2Q8NBM4 344 aa14.64□□□□□ -0.07
TNFRSF1A-213ENST00000540022 WFDC12Q8WWY7 111 aa14.64□□□□□ -0.07
TNFRSF1A-213ENST00000540022 UBE2E2Q96LR5 201 aa14.64□□□□□ -0.07
TNFRSF1A-213ENST00000540022 OR5B12Q96R08 314 aa14.64□□□□□ -0.07
TNFRSF1A-213ENST00000540022 GNB4Q9HAV0 340 aa14.64□□□□□ -0.07
TNFRSF1A-213ENST00000540022 NPVFQ9HCQ7 196 aa14.64□□□□□ -0.07
TNFRSF1A-213ENST00000540022 IGKV1OR2-108A0A075B7D4 117 aa14.63□□□□□ -0.07
TNFRSF1A-213ENST00000540022 TRBV7-1A0A0A6YYK4 115 aa14.63□□□□□ -0.07
TNFRSF1A-213ENST00000540022 UBE2L5PA0A1B0GUS4 154 aa14.63□□□□□ -0.07
TNFRSF1A-213ENST00000540022 DFFBO76075 338 aa14.63□□□□□ -0.07
TNFRSF1A-213ENST00000540022 Q56UQ5 140 aa14.63□□□□□ -0.07
TNFRSF1A-213ENST00000540022 ZNF343Q6P1L6 599 aa14.63□□□□□ -0.07
TNFRSF1A-213ENST00000540022 C18orf65Q6ZTR6 163 aa14.63□□□□□ -0.07
TNFRSF1A-213ENST00000540022 TMEM144Q7Z5S9 345 aa14.63□□□□□ -0.07
TNFRSF1A-213ENST00000540022 CITED2Q99967 270 aaPredicted RBP14.63□□□□□ -0.07
TNFRSF1A-213ENST00000540022 ARPC5LQ9BPX5 153 aa14.63□□□□□ -0.07
TNFRSF1A-213ENST00000540022 CYTL1Q9NRR1 136 aa14.63□□□□□ -0.07
TNFRSF1A-213ENST00000540022 TCRBV4S1A1TA0A5B7 111 aa14.62□□□□□ -0.07
TNFRSF1A-213ENST00000540022 BCL2L11O43521 198 aa14.62□□□□□ -0.07
TNFRSF1A-213ENST00000540022 CLN5O75503 358 aa14.62□□□□□ -0.07
TNFRSF1A-213ENST00000540022 FCGR2BP31994 310 aaPredicted RBP14.62□□□□□ -0.07
TNFRSF1A-213ENST00000540022 NPBWR1P48145 328 aa14.62□□□□□ -0.07
TNFRSF1A-213ENST00000540022 KHDC1LQ5JSQ8 128 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms