RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 OR10C1Q96KK4 312 aa9.79□□□□□ -0.84
VPS28-216ENST00000533806 RBKSQ9H477 322 aa9.79□□□□□ -0.84
VPS28-216ENST00000533806 MLXQ9UH92 298 aa9.79□□□□□ -0.84
VPS28-216ENST00000533806 UFC1Q9Y3C8 167 aa9.79□□□□□ -0.84
VPS28-216ENST00000533806 C15orf62A8K5M9 175 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 CEBPZOSA8MTT3 80 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 FAM90A26D6RGX4 464 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 K7EMT4 169 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 NXPH3O95157 252 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 TMEM50AO95807 157 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 TCRBP04435 133 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 NPBWR1P48145 328 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 IFITM3Q01628 133 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 ASAH1Q13510 395 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 GGNBP1Q5YKI7 109 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 DUSP18Q8NEJ0 188 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 SLC24A4Q8NFF2 622 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 OR4X1Q8NH49 305 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 RNASEH2CQ8TDP1 164 aaKnown RBP9.78□□□□□ -0.84
VPS28-216ENST00000533806 DTD1Q8TEA8 209 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 C20orf85Q9H1P6 137 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 HIPK2Q9H2X6 1198 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 PALMDQ9NP74 551 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 DAZ1Q9NQZ3 744 aaKnown RBP9.78□□□□□ -0.84
VPS28-216ENST00000533806 MRPL27Q9P0M9 148 aaKnown RBP9.78□□□□□ -0.84
VPS28-216ENST00000533806 SMAD5-AS1Q9Y6J3 95 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 U3KQ87 197 aa9.78□□□□□ -0.84
VPS28-216ENST00000533806 MPTX1A8MV57 137 aa9.77□□□□□ -0.85
VPS28-216ENST00000533806 A8MZ25 164 aa9.77□□□□□ -0.85
VPS28-216ENST00000533806 NUPL2O15504 423 aaKnown RBP9.77□□□□□ -0.85
VPS28-216ENST00000533806 ADAP1O75689 374 aa9.77□□□□□ -0.85
VPS28-216ENST00000533806 HOXB5P09067 269 aa9.77□□□□□ -0.85
VPS28-216ENST00000533806 ATP5IP56385 69 aaPredicted RBP9.77□□□□□ -0.85
VPS28-216ENST00000533806 RELQ04864 619 aaPredicted RBP9.77□□□□□ -0.85
VPS28-216ENST00000533806 ZNF846Q147U1 533 aa9.77□□□□□ -0.85
VPS28-216ENST00000533806 TMEM116Q8NCL8 245 aa9.77□□□□□ -0.85
VPS28-216ENST00000533806 OR1S1Q8NH92 325 aa9.77□□□□□ -0.85
VPS28-216ENST00000533806 MITD1Q8WV92 249 aa9.77□□□□□ -0.85
VPS28-216ENST00000533806 WDR12Q9GZL7 423 aaKnown RBP9.77□□□□□ -0.85
VPS28-216ENST00000533806 GNG7O60262 68 aa9.76□□□□□ -0.85
VPS28-216ENST00000533806 CLN5O75503 358 aa9.76□□□□□ -0.85
VPS28-216ENST00000533806 UPK1BO75841 260 aa9.76□□□□□ -0.85
VPS28-216ENST00000533806 IGKV1-17P01599 117 aa9.76□□□□□ -0.85
VPS28-216ENST00000533806 NPY1RP25929 384 aa9.76□□□□□ -0.85
VPS28-216ENST00000533806 OPRK1P41145 380 aa9.76□□□□□ -0.85
VPS28-216ENST00000533806 ID3Q02535 119 aa9.76□□□□□ -0.85
VPS28-216ENST00000533806 PRSS54Q6PEW0 395 aa9.76□□□□□ -0.85
VPS28-216ENST00000533806 TOMM20LQ6UXN7 152 aa9.76□□□□□ -0.85
VPS28-216ENST00000533806 TMEM61Q8N0U2 210 aa9.76□□□□□ -0.85
VPS28-216ENST00000533806 C19orf73Q9NVV2 129 aa9.76□□□□□ -0.85
VPS28-216ENST00000533806 IGHV3OR16-8A0A075B7F1 116 aa9.75□□□□□ -0.85
VPS28-216ENST00000533806 SLC25A4P12235 298 aa9.75□□□□□ -0.85
VPS28-216ENST00000533806 C4orf46Q504U0 113 aa9.75□□□□□ -0.85
VPS28-216ENST00000533806 BTNL8Q6UX41 500 aa9.75□□□□□ -0.85
VPS28-216ENST00000533806 NOXA1Q86UR1 476 aa9.75□□□□□ -0.85
VPS28-216ENST00000533806 OR52B4Q8NGK2 314 aa9.75□□□□□ -0.85
VPS28-216ENST00000533806 OR4D5Q8NGN0 318 aa9.75□□□□□ -0.85
VPS28-216ENST00000533806 COQ8AQ8NI60 647 aa9.75□□□□□ -0.85
VPS28-216ENST00000533806 DYNLRB2Q8TF09 96 aa9.75□□□□□ -0.85
VPS28-216ENST00000533806 WDR89Q96FK6 387 aaPredicted RBP9.75□□□□□ -0.85
VPS28-216ENST00000533806 ZFAND3Q9H8U3 227 aa9.75□□□□□ -0.85
VPS28-216ENST00000533806 NUDT15Q9NV35 164 aa9.75□□□□□ -0.85
VPS28-216ENST00000533806 SMPXQ9UHP9 88 aa9.75□□□□□ -0.85
VPS28-216ENST00000533806 STAB2Q8WWQ8 2551 aa9.75□□□□□ -0.85
VPS28-216ENST00000533806 HUWE1Q7Z6Z7 4374 aaKnown RBP9.74□□□□□ -0.85
VPS28-216ENST00000533806 TRAV25A0A0B4J276 109 aa9.74□□□□□ -0.85
VPS28-216ENST00000533806 RPS10-NUDT3A0A1W2PQS6 291 aa9.74□□□□□ -0.85
VPS28-216ENST00000533806 SYNGR2O43760 224 aa9.74□□□□□ -0.85
VPS28-216ENST00000533806 IFNA10P01566 189 aa9.74□□□□□ -0.85
VPS28-216ENST00000533806 IGLC1P0CG04 106 aa9.74□□□□□ -0.85
VPS28-216ENST00000533806 IGHV4-30-4P0DP06 118 aa9.74□□□□□ -0.85
VPS28-216ENST00000533806 CD69Q07108 199 aa9.74□□□□□ -0.85
VPS28-216ENST00000533806 ZNF600Q6ZNG1 722 aa9.74□□□□□ -0.85
VPS28-216ENST00000533806 SELENOKQ9Y6D0 94 aa9.74□□□□□ -0.85
VPS28-216ENST00000533806 TRAV6A0A075B6T7 132 aa9.73□□□□□ -0.85
VPS28-216ENST00000533806 TRAV30A0A087WSZ9 112 aa9.73□□□□□ -0.85
VPS28-216ENST00000533806 IGHV7-4-1A0A0J9YVY3 117 aa9.73□□□□□ -0.85
VPS28-216ENST00000533806 PRSS46E5RG02 174 aa9.73□□□□□ -0.85
VPS28-216ENST00000533806 CHEK1O14757 476 aa9.73□□□□□ -0.85
VPS28-216ENST00000533806 ZNF207O43670 478 aaKnown RBP9.73□□□□□ -0.85
VPS28-216ENST00000533806 SCAF4O95104 1147 aaKnown RBP9.73□□□□□ -0.85
VPS28-216ENST00000533806 CD7P09564 240 aa9.73□□□□□ -0.85
VPS28-216ENST00000533806 FRMD6-AS1P0C7T7 363 aa9.73□□□□□ -0.85
VPS28-216ENST00000533806 NHLRC4P0CG21 123 aaPredicted RBP9.73□□□□□ -0.85
VPS28-216ENST00000533806 C20orf24Q9BUV8 137 aa9.73□□□□□ -0.85
VPS28-216ENST00000533806 MAGT1Q9H0U3 335 aa9.73□□□□□ -0.85
VPS28-216ENST00000533806 PUS1Q9Y606 427 aaKnown RBP eCLIP9.73□□□□□ -0.85
VPS28-216ENST00000533806 TENM3Q9P273 2699 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 TRAV14DV4A0A0A6YYC5 116 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 FAM240BA0A1B0GVZ2 78 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 TSPAN4O14817 238 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 MED6O75586 246 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 YIF1AO95070 293 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 IFNA21P01568 189 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 H2AFB2P0C5Z0 115 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 IAPPP10997 89 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 GPX4P36969 197 aaPredicted RBP9.72□□□□□ -0.85
VPS28-216ENST00000533806 RND2P52198 227 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 YPEL3P61236 119 aaPredicted RBP9.72□□□□□ -0.85
VPS28-216ENST00000533806 TIGITQ495A1 244 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms