RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 INO80EQ8NBZ0 244 aaPredicted RBP5.79□□□□□ -1.48
CD44-228ENST00000528455 OR2T6Q8NHC8 308 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 GRPEL2Q8TAA5 225 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 FAM110DQ8TAY7 271 aaPredicted RBP5.79□□□□□ -1.48
CD44-228ENST00000528455 RNASEH2CQ8TDP1 164 aaKnown RBP5.79□□□□□ -1.48
CD44-228ENST00000528455 CACNG8Q8WXS5 425 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 C8orf49Q96NF6 230 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 DUX5Q96PT3 197 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 P2RX4Q99571 388 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 GGACTQ9BVM4 153 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 ZNF702PQ9H963 129 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 OR5AC2Q9NZP5 309 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 THYN1Q9P016 225 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 TNFSF18Q9UNG2 199 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 FBXO7Q9Y3I1 522 aa5.79□□□□□ -1.48
CD44-228ENST00000528455 TRBV9A0A0B4J1U6 114 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 A0A0D9SG52 128 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 A0A1B0GUS0 222 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 FAM24AA6NFZ4 105 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 SH2D7A6NKC9 451 aaPredicted RBP5.78□□□□□ -1.48
CD44-228ENST00000528455 PMS2P5A8MQ11 134 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 HKR1P10072 659 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 RNASE2P10153 161 aaKnown RBP5.78□□□□□ -1.48
CD44-228ENST00000528455 IAPPP10997 89 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 S100A11P31949 105 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 SULT1A1P50225 295 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 SLC35B1P78383 322 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 NDPQ00604 133 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 BAXQ07812 192 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 OR2F1Q13607 317 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 ZFP69Q49AA0 526 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 SPINK9Q5DT21 86 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 ETFRF1Q6IPR1 90 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 SLC25A24Q6NUK1 477 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 Q6ZSV7 163 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 CENPVQ7Z7K6 275 aaPredicted RBP5.78□□□□□ -1.48
CD44-228ENST00000528455 STPG2Q8N412 459 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 C3orf56Q8N813 242 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 SLC24A4Q8NFF2 622 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 OR5T1Q8NG75 326 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 OR11H4Q8NGC9 324 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 OR10P1Q8NGE3 313 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 ABHD5Q8WTS1 349 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 AQP10Q96PS8 301 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 FAM103A1Q9BTL3 118 aaKnown RBP5.78□□□□□ -1.48
CD44-228ENST00000528455 KRTAP3-1Q9BYR8 98 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 SLA2Q9H6Q3 261 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 PARP11Q9NR21 331 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 SERTAD4Q9NUC0 356 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 MBD2Q9UBB5 411 aa5.78□□□□□ -1.48
CD44-228ENST00000528455 F11RQ9Y624 299 aaKnown RBP5.78□□□□□ -1.48
CD44-228ENST00000528455 C15orf62A8K5M9 175 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 FNDC10F2Z333 226 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 G3V318 75 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 SMLR1H3BR10 107 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 TAAR5O14804 337 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 IGHG4P01861 327 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 IFNA4P05014 189 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 OR8U8P0C7N1 319 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 AREGP15514 252 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 NPY1RP25929 384 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 CAV2P51636 162 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 HBG1P69891 147 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 HBG2P69892 147 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 NHLH2Q02577 135 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 CFHR3Q02985 330 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 CD300CQ08708 224 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 EXOSC2Q13868 293 aaKnown RBP5.77□□□□□ -1.49
CD44-228ENST00000528455 ZNF345Q14585 488 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 LGALSLQ3ZCW2 172 aaPredicted RBP5.77□□□□□ -1.49
CD44-228ENST00000528455 TEX38Q6PEX7 206 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 COMMD1Q8N668 190 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 NECAP1Q8NC96 275 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 OR4F5Q8NH21 305 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 LINC01006Q8NI28 216 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 TMEM170AQ8WVE7 144 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 DCUN1D4Q92564 292 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 PINX1Q96BK5 328 aaKnown RBP5.77□□□□□ -1.49
CD44-228ENST00000528455 USMG5Q96IX5 58 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 ATP6V0BQ99437 205 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 MFFQ9GZY8 342 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 NPVFQ9HCQ7 196 aa5.77□□□□□ -1.49
CD44-228ENST00000528455 IGLV11-55A0A075B6I3 123 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 FXYD6-FXYD2A0A087WZ82 144 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 A0A0G2JLM5 398 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 RPS10-NUDT3A0A1W2PQS6 291 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 CLPSL1A2RUU4 121 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 PSMB11A5LHX3 300 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 SOX15O60248 233 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 REG1AP05451 166 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 ELANEP08246 267 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 METTL15P1P0C7V9 234 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 APELAP0DMC3 54 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 C4BPBP20851 252 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 PSMB8P28062 276 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 RAB9AP51151 201 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 MFAP2P55001 183 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 EWSR1Q01844 656 aaKnown RBP eCLIP5.76□□□□□ -1.49
CD44-228ENST00000528455 FOXE3Q13461 319 aa5.76□□□□□ -1.49
CD44-228ENST00000528455 ECSCRQ19T08 205 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms