RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 CCL7P80098 99 aa1.21□□□□□ -2.22
HMGB1P28-201ENST00000507778 H3F3AP84243 136 aa1.21□□□□□ -2.22
HMGB1P28-201ENST00000507778 RHEBQ15382 184 aa1.21□□□□□ -2.22
HMGB1P28-201ENST00000507778 TMEM97Q5BJF2 176 aa1.21□□□□□ -2.22
HMGB1P28-201ENST00000507778 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.21□□□□□ -2.22
HMGB1P28-201ENST00000507778 TRAPPC6BQ86SZ2 158 aa1.21□□□□□ -2.22
HMGB1P28-201ENST00000507778 AQP3Q92482 292 aa1.21□□□□□ -2.22
HMGB1P28-201ENST00000507778 MIXL1Q9H2W2 232 aa1.21□□□□□ -2.22
HMGB1P28-201ENST00000507778 ZFHX2Q9C0A1 2572 aaPredicted RBP1.2□□□□□ -2.22
HMGB1P28-201ENST00000507778 MED13Q9UHV7 2174 aa1.2□□□□□ -2.22
HMGB1P28-201ENST00000507778 HCRTO43612 131 aa1.2□□□□□ -2.22
HMGB1P28-201ENST00000507778 RNASE3P12724 160 aaKnown RBP1.2□□□□□ -2.22
HMGB1P28-201ENST00000507778 SPA17Q15506 151 aa1.2□□□□□ -2.22
HMGB1P28-201ENST00000507778 C12orf74Q32Q52 190 aa1.2□□□□□ -2.22
HMGB1P28-201ENST00000507778 TRABDQ9H4I3 376 aa1.2□□□□□ -2.22
HMGB1P28-201ENST00000507778 OSTCQ9NRP0 149 aa1.2□□□□□ -2.22
HMGB1P28-201ENST00000507778 C14orf105Q9NVL8 296 aa1.2□□□□□ -2.22
HMGB1P28-201ENST00000507778 PIK3C2GO75747 1445 aa1.2□□□□□ -2.22
HMGB1P28-201ENST00000507778 ZFYVE9O95405 1425 aa1.2□□□□□ -2.22
HMGB1P28-201ENST00000507778 CPAMD8Q8IZJ3 1885 aa1.2□□□□□ -2.22
HMGB1P28-201ENST00000507778 CCDC88CQ9P219 2028 aa1.2□□□□□ -2.22
HMGB1P28-201ENST00000507778 hCG_1818297A0A087WSY0 165 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 A8MT66 165 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 PDE6DO43924 150 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 FADS1O60427 444 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 OR2B3O76000 313 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 ZNF682O95780 498 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 HAND1O96004 215 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 ASAH2BP0C7U1 165 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 CASP1P29466 404 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 BRS3P32247 399 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 YPEL3P61236 119 aaPredicted RBP1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 OOSP2Q86WS3 158 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 PHF13Q86YI8 300 aaPredicted RBP1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 OR51A2Q8NGJ7 313 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 OR4C6Q8NH72 309 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 PRAP1Q96NZ9 151 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 IDI2-AS1Q9NZ38 188 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 CYSLTR1Q9Y271 337 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 SNURFQ9Y675 71 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 RTL1A6NKG5 1358 aa1.19□□□□□ -2.22
HMGB1P28-201ENST00000507778 MYH11P35749 1972 aa1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 TRAV1-1A0A0B4J248 108 aa1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 C19orf84I3L1E1 186 aa1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 SERPINE1P05121 402 aa1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 C8GP07360 202 aa1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 PPIBP23284 216 aaKnown RBP1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 AP3S2P59780 193 aa1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 PLCXD2Q0VAA5 305 aa1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 FADDQ13158 208 aa1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 LINC01554Q52M75 96 aa1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 TEX36Q5VZQ5 186 aa1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 C12orf45Q8N5I9 185 aaPredicted RBP1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 LINC00311Q8N616 119 aa1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 OR52R1Q8NGF1 315 aa1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 C2orf50Q96LR7 162 aa1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 RNASE7Q9H1E1 156 aaKnown RBP1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 TLNRD1Q9H1K6 362 aa1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 TAS2R4Q9NYW5 299 aa1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 FBXO5Q9UKT4 447 aa1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 GREB1Q4ZG55 1949 aa1.18□□□□□ -2.22
HMGB1P28-201ENST00000507778 RP1L1Q8IWN7 2480 aaPredicted RBP1.17□□□□□ -2.22
HMGB1P28-201ENST00000507778 CCDC144AA2RUR9 1427 aa1.17□□□□□ -2.22
HMGB1P28-201ENST00000507778 OR2T1O43869 369 aa1.17□□□□□ -2.22
HMGB1P28-201ENST00000507778 SMIM17P0DL12 118 aa1.17□□□□□ -2.22
HMGB1P28-201ENST00000507778 MIFP14174 115 aa1.17□□□□□ -2.22
HMGB1P28-201ENST00000507778 KRTAP10-4P60372 401 aaPredicted RBP1.17□□□□□ -2.22
HMGB1P28-201ENST00000507778 OR52L1Q8NGH7 329 aa1.17□□□□□ -2.22
HMGB1P28-201ENST00000507778 GPR146Q96CH1 333 aa1.17□□□□□ -2.22
HMGB1P28-201ENST00000507778 BTF3L4Q96K17 158 aa1.17□□□□□ -2.22
HMGB1P28-201ENST00000507778 UQCC1Q9NVA1 299 aa1.17□□□□□ -2.22
HMGB1P28-201ENST00000507778 HECW1Q76N89 1606 aa1.17□□□□□ -2.22
HMGB1P28-201ENST00000507778 FREM1Q5H8C1 2179 aa1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 IGKV2D-26A0A0A0MRZ7 120 aa1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 C2orf70A6NJV1 201 aa1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 OR1I1O60431 355 aa1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 CTXN2P0C2S0 81 aa1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 OR4E1P0C645 316 aa1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 BAALC-AS2P0C853 105 aa1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 SSR2P43308 183 aa1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 PDE6HQ13956 83 aa1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 AKIRIN2Q53H80 203 aa1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 OR13D1Q8NGV5 346 aa1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 SIGMAR1Q99720 223 aa1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 KIFC1Q9BW19 673 aa1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 KRTAP4-1Q9BYQ7 146 aa1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 NHP2Q9NX24 153 aaKnown RBP1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 TVP23BQ9NYZ1 205 aa1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 EPDR1Q9UM22 224 aa1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 FBN3Q75N90 2809 aa1.16□□□□□ -2.22
HMGB1P28-201ENST00000507778 HEATR5AQ86XA9 2040 aa1.15□□□□□ -2.22
HMGB1P28-201ENST00000507778 A0A087X0T9 212 aa1.15□□□□□ -2.23
HMGB1P28-201ENST00000507778 C1orf196B1AJZ1 125 aa1.15□□□□□ -2.23
HMGB1P28-201ENST00000507778 J3QRK9 145 aa1.15□□□□□ -2.23
HMGB1P28-201ENST00000507778 GEMIN2O14893 280 aaKnown RBP1.15□□□□□ -2.23
HMGB1P28-201ENST00000507778 UBL3O95164 117 aa1.15□□□□□ -2.23
HMGB1P28-201ENST00000507778 MGST1P10620 155 aaKnown RBP1.15□□□□□ -2.23
HMGB1P28-201ENST00000507778 ERVS71-1P61550 626 aa1.15□□□□□ -2.23
HMGB1P28-201ENST00000507778 REEP5Q00765 189 aa1.15□□□□□ -2.23
HMGB1P28-201ENST00000507778 RNASE10Q5GAN6 216 aaKnown RBP1.15□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms