RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 UBE2CO00762 179 aa8.61□□□□□ -1.03
USP4-214ENST00000491791 HMGB3O15347 200 aaKnown RBP8.61□□□□□ -1.03
USP4-214ENST00000491791 SLC25A17O43808 307 aa8.61□□□□□ -1.03
USP4-214ENST00000491791 OR10J1P30954 320 aa8.61□□□□□ -1.03
USP4-214ENST00000491791 CEACAM3P40198 252 aa8.61□□□□□ -1.03
USP4-214ENST00000491791 CEBPGP53567 150 aa8.61□□□□□ -1.03
USP4-214ENST00000491791 GNB1P62873 340 aa8.61□□□□□ -1.03
USP4-214ENST00000491791 TPTE2P1Q5T6R2 138 aa8.61□□□□□ -1.03
USP4-214ENST00000491791 NPBQ8NG41 125 aa8.61□□□□□ -1.03
USP4-214ENST00000491791 OR1P1Q8NH06 330 aa8.61□□□□□ -1.03
USP4-214ENST00000491791 SSMEM1Q8WWF3 244 aa8.61□□□□□ -1.03
USP4-214ENST00000491791 TMEM190Q8WZ59 177 aa8.61□□□□□ -1.03
USP4-214ENST00000491791 DPM3Q9P2X0 92 aa8.61□□□□□ -1.03
USP4-214ENST00000491791 ANKHD1Q8IWZ3 2542 aaKnown RBP8.6□□□□□ -1.03
USP4-214ENST00000491791 A0A1W2PRE2 83 aa8.6□□□□□ -1.03
USP4-214ENST00000491791 TCRBV4S1A1TA0A5B7 111 aa8.6□□□□□ -1.03
USP4-214ENST00000491791 RPL27AP46776 148 aaKnown RBP8.6□□□□□ -1.03
USP4-214ENST00000491791 TAS2R45P59539 299 aa8.6□□□□□ -1.03
USP4-214ENST00000491791 PLP1P60201 277 aa8.6□□□□□ -1.03
USP4-214ENST00000491791 HCP5Q6MZN7 132 aa8.6□□□□□ -1.03
USP4-214ENST00000491791 PPP1R27Q86WC6 154 aa8.6□□□□□ -1.03
USP4-214ENST00000491791 LINC00518Q8N0U6 118 aa8.6□□□□□ -1.03
USP4-214ENST00000491791 TMEM116Q8NCL8 245 aa8.6□□□□□ -1.03
USP4-214ENST00000491791 OR1L4Q8NGR5 311 aa8.6□□□□□ -1.03
USP4-214ENST00000491791 IGFBPL1Q8WX77 278 aa8.6□□□□□ -1.03
USP4-214ENST00000491791 RPEQ96AT9 228 aa8.6□□□□□ -1.03
USP4-214ENST00000491791 BTF3L4Q96K17 158 aa8.6□□□□□ -1.03
USP4-214ENST00000491791 SLC25A33Q9BSK2 321 aa8.6□□□□□ -1.03
USP4-214ENST00000491791 SSBP3Q9BWW4 388 aaPredicted RBP8.6□□□□□ -1.03
USP4-214ENST00000491791 FNDC4Q9H6D8 234 aaPredicted RBP8.6□□□□□ -1.03
USP4-214ENST00000491791 ROS1P08922 2347 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 IGKV1D-37A0A075B6S9 117 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 TEX22C9J3V5 150 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 OVOL3O00110 214 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 PHOX2AO14813 284 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 PPP1R2P9O14990 202 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 EIF3GO75821 320 aaKnown RBP eCLIP8.59□□□□□ -1.03
USP4-214ENST00000491791 NDUFA3O95167 84 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 TYMSP04818 313 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 CXCL1P09341 107 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 C8orf88P0DMB2 117 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 DEFA4P12838 97 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 HTR1DP28221 377 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 SRP14P37108 136 aaKnown RBP8.59□□□□□ -1.03
USP4-214ENST00000491791 GPR6P46095 362 aaPredicted RBP8.59□□□□□ -1.03
USP4-214ENST00000491791 ATP5G3P48201 142 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 EFNA4P52798 201 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 EBI3Q14213 229 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 MINOS1Q5TGZ0 78 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 LINC01551Q86U37 167 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 OR51G1Q8NGK1 321 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 CFHR4Q92496 578 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 RPUSD4Q96CM3 377 aaKnown RBP8.59□□□□□ -1.03
USP4-214ENST00000491791 FAM210BQ96KR6 192 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 PFDN5Q99471 154 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 TRGV9Q99603 122 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 TCEAL7Q9BRU2 100 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 DNAJC4Q9NNZ3 241 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 POLR3KQ9Y2Y1 108 aaPredicted RBP8.59□□□□□ -1.03
USP4-214ENST00000491791 YTHDF2Q9Y5A9 579 aaKnown RBP8.59□□□□□ -1.03
USP4-214ENST00000491791 MINOS1-NBL1R4GNA1 71 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 TNCP24821 2201 aa8.59□□□□□ -1.03
USP4-214ENST00000491791 NAV3Q8IVL0 2385 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 ELOA3CA0A087WX78 387 aaPredicted RBP8.58□□□□□ -1.04
USP4-214ENST00000491791 A0A1W2PPR1 153 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 AP4M1O00189 453 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 GGCTO75223 188 aaKnown RBP8.58□□□□□ -1.04
USP4-214ENST00000491791 LCN2P80188 198 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 SSBP2P81877 361 aaPredicted RBP8.58□□□□□ -1.04
USP4-214ENST00000491791 FOXL1Q12952 345 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 ADIRFQ15847 76 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 C10orf55Q5SWW7 151 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 LDLRAD2Q5SZI1 272 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 FAM78BQ5VT40 261 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 SPATA31B1PQ5VZV4 182 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 MIR17HGQ75NE6 70 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 MOB3BQ86TA1 216 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 OR1L6Q8NGR2 347 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 OR2T6Q8NHC8 308 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 TMEM37Q8WXS4 190 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 ZNF503Q96F45 646 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 FAM167A-AS1Q96KT0 104 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 UHRF2Q96PU4 802 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 SAV1Q9H4B6 383 aaPredicted RBP8.58□□□□□ -1.04
USP4-214ENST00000491791 SRD5A3Q9H8P0 318 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 TPSG1Q9NRR2 321 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 F11RQ9Y624 299 aaKnown RBP8.58□□□□□ -1.04
USP4-214ENST00000491791 MALRD1Q5VYJ5 2156 aa8.58□□□□□ -1.04
USP4-214ENST00000491791 MAP1AP78559 2803 aaPredicted RBP8.58□□□□□ -1.04
USP4-214ENST00000491791 NIPBLQ6KC79 2804 aaeCLIP8.58□□□□□ -1.04
USP4-214ENST00000491791 TRAV9-1A0A075B6T8 112 aa8.57□□□□□ -1.04
USP4-214ENST00000491791 H7BYZ3 331 aa8.57□□□□□ -1.04
USP4-214ENST00000491791 ENSAO43768 121 aaKnown RBP8.57□□□□□ -1.04
USP4-214ENST00000491791 ACTL6BO94805 426 aa8.57□□□□□ -1.04
USP4-214ENST00000491791 NDUFB4O95168 129 aa8.57□□□□□ -1.04
USP4-214ENST00000491791 S100A8P05109 93 aa8.57□□□□□ -1.04
USP4-214ENST00000491791 MFAP2P55001 183 aa8.57□□□□□ -1.04
USP4-214ENST00000491791 MLANAQ16655 118 aa8.57□□□□□ -1.04
USP4-214ENST00000491791 CST9LP1Q5W188 147 aa8.57□□□□□ -1.04
USP4-214ENST00000491791 CCDC144NLQ6NUI1 221 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms