RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 ERCC6Q03468 1493 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 CECR2Q9BXF3 1484 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 PCLOQ9Y6V0 5065 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 TNRC18O15417 2968 aaPredicted RBP0.72□□□□□ -2.29
CPSF3-205ENST00000489629 COL4A5P29400 1685 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 DOCK4Q8N1I0 1966 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 SMARCA4P51532 1647 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 RAPGEF6Q8TEU7 1601 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 TTC21AQ8NDW8 1320 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 NAV2Q8IVL1 2488 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 INTS1Q8N201 2190 aaKnown RBP0.72□□□□□ -2.29
CPSF3-205ENST00000489629 IGKV1D-42A0A075B6H8 117 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 TRAV9-1A0A075B6T8 112 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 hCG_1818297A0A087WSY0 165 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 IRGMA1A4Y4 181 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 FAM159BA6NKW6 160 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 A8MT66 165 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 CLDN25C9JDP6 229 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 PDE6DO43924 150 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 OR7C1O76099 320 aaPredicted RBP0.72□□□□□ -2.29
CPSF3-205ENST00000489629 SERPINE1P05121 402 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 CTSDP07339 412 aaPredicted RBP0.72□□□□□ -2.29
CPSF3-205ENST00000489629 SMIM17P0DL12 118 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 HIST1H3AP68431 136 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 H3F3AP84243 136 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 ZNF345Q14585 488 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 ZNF846Q147U1 533 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 NNATQ16517 81 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 Q1T7F1 81 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 ARHGAP11BQ3KRB8 267 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 TMEM42Q69YG0 159 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 LCN15Q6UWW0 184 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 Q6ZQT0 140 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 C7orf65Q6ZTY9 151 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 DHFR2Q86XF0 187 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 GDPD1Q8N9F7 314 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 WFDC5Q8TCV5 224 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 CT55Q8WUE5 264 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 BORCS7Q96B45 105 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 DOHHQ9BU89 302 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 TRIM4Q9C037 500 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 C20orf27Q9GZN8 174 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 COMMD5Q9GZQ3 224 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 SCN3AQ9NY46 2000 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 NEO1Q92859 1461 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 MYH10P35580 1976 aa0.72□□□□□ -2.29
CPSF3-205ENST00000489629 TONSLQ96HA7 1378 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 EPG5Q9HCE0 2579 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 ARHGEF11O15085 1522 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 TOPBP1Q92547 1522 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 TRGV2A0A075B6R0 118 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 PIRO00625 290 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 GPX2P18283 190 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 FKBP2P26885 142 aaKnown RBP0.71□□□□□ -2.3
CPSF3-205ENST00000489629 FXYD2P54710 66 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 HIST1H4AP62805 103 aaKnown RBP0.71□□□□□ -2.3
CPSF3-205ENST00000489629 LINC01554Q52M75 96 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 HACD4Q5VWC8 232 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 FP248Q71RG6 208 aaPredicted RBP0.71□□□□□ -2.3
CPSF3-205ENST00000489629 C10orf126Q8N4M7 172 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 DEFB119Q8N690 84 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 OR8B3Q8NGG8 313 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 DNAJC9Q8WXX5 260 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 TMEM106AQ96A25 262 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 ADAT3Q96EY9 351 aaPredicted RBP0.71□□□□□ -2.3
CPSF3-205ENST00000489629 C9orf16Q9BUW7 83 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 PSTPIP2Q9H939 334 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 C8orf4Q9NR00 106 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 CEP164Q9UPV0 1460 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 CACNA1BQ00975 2339 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 PDE4DIPQ5VU43 2346 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 SETD5Q9C0A6 1442 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 KDM6BO15054 1643 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 CAMSAP1Q5T5Y3 1602 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 DOPEY1Q5JWR5 2465 aa0.71□□□□□ -2.3
CPSF3-205ENST00000489629 FLNBO75369 2602 aaKnown RBP0.7□□□□□ -2.3
CPSF3-205ENST00000489629 KDM5CP41229 1560 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 BAZ1AQ9NRL2 1556 aaPredicted RBP0.7□□□□□ -2.3
CPSF3-205ENST00000489629 ABCA12Q86UK0 2595 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 DLG5Q8TDM6 1919 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 KIAA1109Q2LD37 5005 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 IGKV1-9A0A0C4DH69 117 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 TMEM212A6NML5 194 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 PMP2P02689 132 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 CRPP02741 224 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 C8GP07360 202 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 UBBP0CG47 229 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 SPI1P17947 270 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 PPP1R2P41236 205 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 EMP1P54849 157 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 BASP1P80723 227 aaKnown RBP0.7□□□□□ -2.3
CPSF3-205ENST00000489629 SPANXN3Q5MJ09 141 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 PPP1R2P3Q6NXS1 205 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 Q6Q795 121 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 LCA10Q71F78 164 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 MIR17HGQ75NE6 70 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 OOSP2Q86WS3 158 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 OR11H6Q8NGC7 330 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 OR5A1Q8NGJ0 315 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 STAG3L4Q8TBR4 150 aa0.7□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms