RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 ZNF705BP0CI00 300 aaPredicted RBP11.45□□□□□ -0.58
USP48-210ENST00000489108 PRCDQ00LT1 54 aa11.45□□□□□ -0.58
USP48-210ENST00000489108 OR4A16Q8NH70 328 aa11.45□□□□□ -0.58
USP48-210ENST00000489108 YTHDF1Q9BYJ9 559 aaKnown RBP11.45□□□□□ -0.58
USP48-210ENST00000489108 NDUFB11Q9NX14 153 aa11.45□□□□□ -0.58
USP48-210ENST00000489108 TMED3Q9Y3Q3 217 aa11.45□□□□□ -0.58
USP48-210ENST00000489108 NBDYA0A0U1RRE5 68 aa11.44□□□□□ -0.58
USP48-210ENST00000489108 SMIM9A6NGZ8 99 aa11.44□□□□□ -0.58
USP48-210ENST00000489108 FAM3BP58499 235 aaPredicted RBP11.44□□□□□ -0.58
USP48-210ENST00000489108 HSPE1P61604 102 aaKnown RBP11.44□□□□□ -0.58
USP48-210ENST00000489108 SPINK9Q5DT21 86 aa11.44□□□□□ -0.58
USP48-210ENST00000489108 DHRS11Q6UWP2 260 aa11.44□□□□□ -0.58
USP48-210ENST00000489108 SPATA12Q7Z6I5 190 aa11.44□□□□□ -0.58
USP48-210ENST00000489108 TMEM230Q96A57 120 aa11.44□□□□□ -0.58
USP48-210ENST00000489108 NARS2Q96I59 477 aaKnown RBP11.44□□□□□ -0.58
USP48-210ENST00000489108 MRPL36Q9P0J6 103 aaKnown RBP11.44□□□□□ -0.58
USP48-210ENST00000489108 RFNGQ9Y644 331 aa11.44□□□□□ -0.58
USP48-210ENST00000489108 DMBT1Q9UGM3 2413 aaPredicted RBP11.43□□□□□ -0.58
USP48-210ENST00000489108 MEIS3P1A6NDR6 274 aa11.43□□□□□ -0.58
USP48-210ENST00000489108 RFX2P48378 723 aa11.43□□□□□ -0.58
USP48-210ENST00000489108 FXYD7P58549 80 aa11.43□□□□□ -0.58
USP48-210ENST00000489108 MLANAQ16655 118 aa11.43□□□□□ -0.58
USP48-210ENST00000489108 KCTD21Q4G0X4 260 aa11.43□□□□□ -0.58
USP48-210ENST00000489108 H2BFWTQ7Z2G1 175 aa11.43□□□□□ -0.58
USP48-210ENST00000489108 OR5H6Q8NGV6 325 aa11.43□□□□□ -0.58
USP48-210ENST00000489108 SEC22AQ96IW7 307 aa11.43□□□□□ -0.58
USP48-210ENST00000489108 ZNF2Q9BSG1 426 aaPredicted RBP11.43□□□□□ -0.58
USP48-210ENST00000489108 EHFQ9NZC4 300 aa11.43□□□□□ -0.58
USP48-210ENST00000489108 RRP15Q9Y3B9 282 aaKnown RBP11.43□□□□□ -0.58
USP48-210ENST00000489108 U3KQE9 123 aa11.43□□□□□ -0.58
USP48-210ENST00000489108 EIF2B2P49770 351 aaKnown RBP11.42□□□□□ -0.58
USP48-210ENST00000489108 OXA1LQ15070 435 aa11.42□□□□□ -0.58
USP48-210ENST00000489108 C16orf54Q6UWD8 224 aa11.42□□□□□ -0.58
USP48-210ENST00000489108 CMTM1Q8IZ96 169 aa11.42□□□□□ -0.58
USP48-210ENST00000489108 ATG101Q9BSB4 218 aa11.42□□□□□ -0.58
USP48-210ENST00000489108 AUNIPQ9H7T9 357 aa11.42□□□□□ -0.58
USP48-210ENST00000489108 TEX48A0A1B0GUV7 120 aa11.41□□□□□ -0.58
USP48-210ENST00000489108 FAM90A26D6RGX4 464 aa11.41□□□□□ -0.58
USP48-210ENST00000489108 GPR31O00270 319 aa11.41□□□□□ -0.58
USP48-210ENST00000489108 CLN5O75503 358 aa11.41□□□□□ -0.58
USP48-210ENST00000489108 IGKV1-39P01597 117 aa11.41□□□□□ -0.58
USP48-210ENST00000489108 IGKV3-20P01619 116 aa11.41□□□□□ -0.58
USP48-210ENST00000489108 IGKV1D-39P04432 117 aa11.41□□□□□ -0.58
USP48-210ENST00000489108 SNCAP37840 140 aa11.41□□□□□ -0.58
USP48-210ENST00000489108 SNRPD3P62318 126 aaKnown RBP11.41□□□□□ -0.58
USP48-210ENST00000489108 GLMPQ8WWB7 406 aa11.41□□□□□ -0.58
USP48-210ENST00000489108 SLC25A38Q96DW6 304 aa11.41□□□□□ -0.58
USP48-210ENST00000489108 VCXQ9H320 206 aa11.41□□□□□ -0.58
USP48-210ENST00000489108 EPM2AB3EWF7 344 aa11.4□□□□□ -0.58
USP48-210ENST00000489108 PMP2P02689 132 aa11.4□□□□□ -0.58
USP48-210ENST00000489108 HLA-DRB4P13762 266 aa11.4□□□□□ -0.58
USP48-210ENST00000489108 CBX5P45973 191 aa11.4□□□□□ -0.58
USP48-210ENST00000489108 AP2S1P53680 142 aaPredicted RBP11.4□□□□□ -0.58
USP48-210ENST00000489108 TBCEQ15813 527 aaPredicted RBP11.4□□□□□ -0.58
USP48-210ENST00000489108 IZUMO4Q1ZYL8 232 aa11.4□□□□□ -0.58
USP48-210ENST00000489108 TIGITQ495A1 244 aa11.4□□□□□ -0.58
USP48-210ENST00000489108 PHLDA2Q53GA4 152 aa11.4□□□□□ -0.58
USP48-210ENST00000489108 SFXN4Q6P4A7 337 aa11.4□□□□□ -0.58
USP48-210ENST00000489108 ZNRF2Q8NHG8 242 aa11.4□□□□□ -0.58
USP48-210ENST00000489108 FNDC4Q9H6D8 234 aaPredicted RBP11.4□□□□□ -0.58
USP48-210ENST00000489108 TXNL4BQ9NX01 149 aaKnown RBP11.4□□□□□ -0.58
USP48-210ENST00000489108 HLA-DRB4X5D2U9 266 aa11.4□□□□□ -0.58
USP48-210ENST00000489108 IGKV1-17P01599 117 aa11.39□□□□□ -0.59
USP48-210ENST00000489108 INAFM2P0DMQ5 153 aa11.39□□□□□ -0.59
USP48-210ENST00000489108 DEFB1P60022 68 aa11.39□□□□□ -0.59
USP48-210ENST00000489108 GDF5OSQ5U4N7 250 aa11.39□□□□□ -0.59
USP48-210ENST00000489108 C15orf53Q8NAA6 179 aa11.39□□□□□ -0.59
USP48-210ENST00000489108 OR4X1Q8NH49 305 aa11.39□□□□□ -0.59
USP48-210ENST00000489108 FXYD6Q9H0Q3 95 aa11.39□□□□□ -0.59
USP48-210ENST00000489108 YTHDF2Q9Y5A9 579 aaKnown RBP11.39□□□□□ -0.59
USP48-210ENST00000489108 RNASE2P10153 161 aaKnown RBP11.38□□□□□ -0.59
USP48-210ENST00000489108 KRTAP10-2P60368 255 aa11.38□□□□□ -0.59
USP48-210ENST00000489108 DAD1P61803 113 aa11.38□□□□□ -0.59
USP48-210ENST00000489108 MRGPRFQ96AM1 343 aa11.38□□□□□ -0.59
USP48-210ENST00000489108 SEPSECSQ9HD40 501 aaKnown RBP11.38□□□□□ -0.59
USP48-210ENST00000489108 IFT46Q9NQC8 304 aa11.38□□□□□ -0.59
USP48-210ENST00000489108 DIABLOQ9NR28 239 aa11.38□□□□□ -0.59
USP48-210ENST00000489108 FAM212BQ9NTI7 297 aaPredicted RBP11.38□□□□□ -0.59
USP48-210ENST00000489108 A0A0A6YYH2 397 aa11.37□□□□□ -0.59
USP48-210ENST00000489108 A6NJ64 397 aa11.37□□□□□ -0.59
USP48-210ENST00000489108 HNRNPCP07910 306 aaKnown RBP eCLIP11.37□□□□□ -0.59
USP48-210ENST00000489108 OPRK1P41145 380 aa11.37□□□□□ -0.59
USP48-210ENST00000489108 SUB1P53999 127 aaKnown RBP eCLIP11.37□□□□□ -0.59
USP48-210ENST00000489108 GSG1LQ6UXU4 331 aa11.37□□□□□ -0.59
USP48-210ENST00000489108 TBC1D26Q86UD7 250 aa11.37□□□□□ -0.59
USP48-210ENST00000489108 NRN1Q9NPD7 142 aa11.37□□□□□ -0.59
USP48-210ENST00000489108 LOC102723971A0A1B0GUV8 181 aa11.36□□□□□ -0.59
USP48-210ENST00000489108 INS-IGF2F8WCM5 200 aa11.36□□□□□ -0.59
USP48-210ENST00000489108 CORTO00230 105 aa11.36□□□□□ -0.59
USP48-210ENST00000489108 CLEC2LP0C7M8 214 aa11.36□□□□□ -0.59
USP48-210ENST00000489108 SDC2P34741 201 aa11.36□□□□□ -0.59
USP48-210ENST00000489108 NKX2-1P43699 371 aaPredicted RBP11.36□□□□□ -0.59
USP48-210ENST00000489108 AQP4P55087 323 aa11.36□□□□□ -0.59
USP48-210ENST00000489108 MXD1Q05195 221 aa11.36□□□□□ -0.59
USP48-210ENST00000489108 C1orf158Q8N1D5 194 aa11.36□□□□□ -0.59
USP48-210ENST00000489108 SLC35G3Q8N808 338 aa11.36□□□□□ -0.59
USP48-210ENST00000489108 OR6F1Q8NGZ6 308 aa11.36□□□□□ -0.59
USP48-210ENST00000489108 TRAV30A0A087WSZ9 112 aa11.35□□□□□ -0.59
USP48-210ENST00000489108 SCGB2A1O75556 95 aa11.35□□□□□ -0.59
USP48-210ENST00000489108 HBE1P02100 147 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms