RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 PARP11Q9NR21 331 aa5.23□□□□□ -1.57
USP48-208ENST00000479177 AURKAIP1Q9NWT8 199 aaPredicted RBP5.23□□□□□ -1.57
USP48-208ENST00000479177 U3KQ87 197 aa5.23□□□□□ -1.57
USP48-208ENST00000479177 PMS2P5A8MQ11 134 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 NPIPB5A8MRT5 1133 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 INAFM1C9JVW0 142 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 PRSS46E5RG02 174 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 ATP6V0E1O15342 81 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 SCAF4O95104 1147 aaKnown RBP5.22□□□□□ -1.57
USP48-208ENST00000479177 IFNA10P01566 189 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 REG1AP05451 166 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 OR8U8P0C7N1 319 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 APELAP0DMC3 54 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 CTRB1P17538 263 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 S100A11P31949 105 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 HTR2BP41595 481 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 ATP5IP56385 69 aaPredicted RBP5.22□□□□□ -1.57
USP48-208ENST00000479177 RPP30P78346 268 aaKnown RBP5.22□□□□□ -1.57
USP48-208ENST00000479177 ERHP84090 104 aaKnown RBP5.22□□□□□ -1.57
USP48-208ENST00000479177 NHLH2Q02577 135 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 SLC38A11Q08AI6 406 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 OPCMLQ14982 345 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 PVRIGQ6DKI7 326 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 CTRB2Q6GPI1 263 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 C19orf35Q6ZS72 473 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 OR1P1Q8NH06 330 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 SGMS2Q8NHU3 365 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 ABHD5Q8WTS1 349 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 RAB24Q969Q5 203 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 P2RX4Q99571 388 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 ARPC5LQ9BPX5 153 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 SMIM3Q9BZL3 60 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 WFDC1Q9HC57 220 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 ESM1Q9NQ30 184 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 TNFRSF19Q9NS68 423 aa5.22□□□□□ -1.57
USP48-208ENST00000479177 PAIP2BQ9ULR5 123 aaKnown RBP5.22□□□□□ -1.57
USP48-208ENST00000479177 F11RQ9Y624 299 aaKnown RBP5.22□□□□□ -1.57
USP48-208ENST00000479177 KANTRA0A1W2PQU2 76 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 LINC01548A6NM66 108 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 CLDN34H7C241 214 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 TAAR5O14804 337 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 IGHG2P01859 326 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 IGF1P05019 195 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 CRYGCP07315 174 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 C4BPBP20851 252 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 SNCAP37840 140 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 MFAP2P55001 183 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 BLCAPP62952 87 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 HBG1P69891 147 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 HBG2P69892 147 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 DLK1P80370 383 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 CLINT1Q14677 625 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 ECSCRQ19T08 205 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 OR8G2PQ6IF36 304 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 RBMS3Q6XE24 437 aaKnown RBP5.21□□□□□ -1.58
USP48-208ENST00000479177 Q71RC1 249 aaPredicted RBP5.21□□□□□ -1.58
USP48-208ENST00000479177 SLC35E3Q7Z769 313 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 TMEM217Q8N7C4 229 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 LFNGQ8NES3 379 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 OR1S2Q8NGQ3 325 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 OR5C1Q8NGR4 320 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 STOML3Q8TAV4 291 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 FAM110DQ8TAY7 271 aaPredicted RBP5.21□□□□□ -1.58
USP48-208ENST00000479177 DUX5Q96PT3 197 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 NEU1Q99519 415 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 ATP5SQ99766 215 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 NPFFR1Q9GZQ6 430 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 ZNF702PQ9H963 129 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 CYTL1Q9NRR1 136 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 ZNF580Q9UK33 172 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 DMRT1Q9Y5R6 373 aa5.21□□□□□ -1.58
USP48-208ENST00000479177 IGLV11-55A0A075B6I3 123 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 B5MCH6 92 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 G3V318 75 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 AP4M1O00189 453 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 IFNA4P05014 189 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 FAM157CP0CG43 387 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 SUB1P53999 127 aaKnown RBP eCLIP5.2□□□□□ -1.586e-17■■■□□ 18.4
USP48-208ENST00000479177 HILS1P60008 231 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 RAB11AP62491 216 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 UBA52P62987 128 aaKnown RBP5.2□□□□□ -1.58
USP48-208ENST00000479177 ODF1Q14990 250 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 VWC2Q2TAL6 325 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 KLK9Q2XQG4 91 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 TMEM95Q3KNT9 176 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 C9orf152Q5JTZ5 239 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 RPL7L1Q6DKI1 246 aaKnown RBP5.2□□□□□ -1.58
USP48-208ENST00000479177 UNQ5815/PRO19632Q6UWF5 114 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 SLC16A13Q7RTY0 426 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 SLC51BQ86UW2 128 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 Q8N2B8 174 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 TTC9CQ8N5M4 171 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 OR10P1Q8NGE3 313 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 RNASEH2CQ8TDP1 164 aaKnown RBP5.2□□□□□ -1.58
USP48-208ENST00000479177 ZNF418Q8TF45 676 aaPredicted RBP5.2□□□□□ -1.58
USP48-208ENST00000479177 PINX1Q96BK5 328 aaKnown RBP5.2□□□□□ -1.58
USP48-208ENST00000479177 TMEM68Q96MH6 324 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 TMEM147Q9BVK8 224 aa5.2□□□□□ -1.58
USP48-208ENST00000479177 ZNF471Q9BX82 626 aaPredicted RBP5.2□□□□□ -1.58
USP48-208ENST00000479177 KLK9Q9UKQ9 250 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms