RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 EDF1O60869 148 aaKnown RBP3.18□□□□□ -1.9
USP4-209ENST00000475873 KBTBD11O94819 623 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 IGLV2-8P01709 118 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 LINC00614P0C842 121 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 DEFA4P12838 97 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 COX4I1P13073 169 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 MGMTP16455 207 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 S100PP25815 95 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 MEOX2P50222 304 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 AKR1D1P51857 326 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 RPL30P62888 115 aaKnown RBP3.18□□□□□ -1.9
USP4-209ENST00000475873 HLA-DRB3P79483 266 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 WFDC2Q14508 124 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 ATP6AP1Q15904 470 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 RTL8BQ17RB0 113 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 PSMG4Q5JS54 123 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 ZFP1Q6P2D0 407 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 HACD2Q6Y1H2 254 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 Q8N814 137 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 DUSP18Q8NEJ0 188 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 NUDT10Q8NFP7 164 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 STXBP6Q8NFX7 210 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 OR10W1Q8NGF6 305 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 OSR1Q8TAX0 266 aaPredicted RBP3.18□□□□□ -1.9
USP4-209ENST00000475873 TMEM167AQ8TBQ9 72 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 SCARB1Q8WTV0 552 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 PACRGQ96M98 296 aaPredicted RBP3.18□□□□□ -1.9
USP4-209ENST00000475873 THTPAQ9BU02 230 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 C1QTNF4Q9BXJ3 329 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 SELENOIQ9C0D9 397 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 OR51E2Q9H255 320 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 AUNIPQ9H7T9 357 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 REEP1Q9H902 201 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 TRAV3A0A0B4J244 114 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 A0A0J9YY99 117 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.17□□□□□ -1.9
USP4-209ENST00000475873 J3QRE1 110 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 SIVA1O15304 175 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 RGS10O43665 173 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 ZNF780AO75290 641 aaPredicted RBP3.17□□□□□ -1.9
USP4-209ENST00000475873 YIF1AO95070 293 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 IGKV3-20P01619 116 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 ATP5G1P05496 136 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 HTR1AP08908 422 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 RD3LP0DJH9 198 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 HLA-DRB4P13762 266 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 HSD17B1P14061 328 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 GNB3P16520 340 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 HOXA5P20719 270 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 ZBTB25P24278 435 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 RCVRNP35243 200 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 ATP5G3P48201 142 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 SNRPGP62308 76 aaKnown RBP3.17□□□□□ -1.9
USP4-209ENST00000475873 RPL11P62913 178 aaKnown RBP3.17□□□□□ -1.9
USP4-209ENST00000475873 CT83Q5H943 113 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 OR2B11Q5JQS5 317 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 OGFRL1Q5TC84 451 aaPredicted RBP3.17□□□□□ -1.9
USP4-209ENST00000475873 OR2G6Q5TZ20 316 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 GLIPR1L1Q6UWM5 242 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 TOMM20LQ6UXN7 152 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 CYP2R1Q6VVX0 501 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 FAM220AQ7Z4H9 259 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 SPAG16Q8N0X2 631 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 UBAC2Q8NBM4 344 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 OR13F1Q8NGS4 319 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 RXFP4Q8TDU9 374 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 CCDC124Q96CT7 223 aaKnown RBP3.17□□□□□ -1.9
USP4-209ENST00000475873 GPHA2Q96T91 129 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 ZNF184Q99676 751 aaPredicted RBP3.17□□□□□ -1.9
USP4-209ENST00000475873 CHAC1Q9BUX1 264 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 C1orf43Q9BWL3 253 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 JAM3Q9BX67 310 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 SLC35B3Q9H1N7 401 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 ZFAND3Q9H8U3 227 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 TMEM138Q9NPI0 162 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 PAK1IP1Q9NWT1 392 aaPredicted RBP3.17□□□□□ -1.9
USP4-209ENST00000475873 C21orf62Q9NYP8 219 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 FLVCR2Q9UPI3 526 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 EXOGQ9Y2C4 368 aaKnown RBP3.17□□□□□ -1.9
USP4-209ENST00000475873 BOLA1Q9Y3E2 137 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 HLA-DRB4X5D2U9 266 aa3.17□□□□□ -1.9
USP4-209ENST00000475873 TRAV8-7A0A075B6U6 113 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 A0A0A6YYD4 124 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 TRBV6-6A0A0A6YYG2 114 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 A0A0U1RQV1 116 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 A0A1B0GU03 582 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 SMIM31A0A1B0GVY4 71 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 FBLL1A6NHQ2 334 aaKnown RBP3.16□□□□□ -1.9
USP4-209ENST00000475873 LYRM9A8MSI8 78 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 ZNF705GA8MUZ8 300 aaPredicted RBP3.16□□□□□ -1.9
USP4-209ENST00000475873 CCSO14618 274 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 CREBL2O60519 120 aaPredicted RBP3.16□□□□□ -1.9
USP4-209ENST00000475873 FCGR3BO75015 233 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 DCTN3O75935 186 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 NXPH4O95158 308 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 IGHV3-48P01763 117 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 HBE1P02100 147 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 RRASP10301 218 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 IGFBP3P17936 291 aaPredicted RBP3.16□□□□□ -1.9
USP4-209ENST00000475873 AZU1P20160 251 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms