RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 DAPK2Q9UIK4 370 aa13□□□□□ -0.33
SHH-205ENST00000472308 TRAV18A0A075B6X5 111 aa12.99□□□□□ -0.33
SHH-205ENST00000472308 NBDYA0A0U1RRE5 68 aa12.99□□□□□ -0.33
SHH-205ENST00000472308 FAM3BP58499 235 aaPredicted RBP12.99□□□□□ -0.33
SHH-205ENST00000472308 NUTF2P61970 127 aaKnown RBP12.99□□□□□ -0.33
SHH-205ENST00000472308 KCTD21Q4G0X4 260 aa12.99□□□□□ -0.33
SHH-205ENST00000472308 SPATA12Q7Z6I5 190 aa12.99□□□□□ -0.33
SHH-205ENST00000472308 TSPAN14Q8NG11 270 aa12.99□□□□□ -0.33
SHH-205ENST00000472308 BORCS5Q969J3 196 aa12.99□□□□□ -0.33
SHH-205ENST00000472308 SLC25A38Q96DW6 304 aa12.99□□□□□ -0.33
SHH-205ENST00000472308 RNF167Q9H6Y7 350 aa12.99□□□□□ -0.33
SHH-205ENST00000472308 VPS13BQ7Z7G8 4022 aa12.99□□□□□ -0.33
SHH-205ENST00000472308 TBCEQ15813 527 aaPredicted RBP12.98□□□□□ -0.33
SHH-205ENST00000472308 SEC22AQ96IW7 307 aa12.98□□□□□ -0.33
SHH-205ENST00000472308 U3KQE9 123 aa12.98□□□□□ -0.33
SHH-205ENST00000472308 SMIM9A6NGZ8 99 aa12.97□□□□□ -0.33
SHH-205ENST00000472308 FAM90A26D6RGX4 464 aa12.97□□□□□ -0.33
SHH-205ENST00000472308 IGKV1-39P01597 117 aa12.97□□□□□ -0.33
SHH-205ENST00000472308 IGKV1D-39P04432 117 aa12.97□□□□□ -0.33
SHH-205ENST00000472308 SPINK9Q5DT21 86 aa12.97□□□□□ -0.33
SHH-205ENST00000472308 ZNRF2Q8NHG8 242 aa12.97□□□□□ -0.33
SHH-205ENST00000472308 GLMPQ8WWB7 406 aa12.97□□□□□ -0.33
SHH-205ENST00000472308 FXYD6Q9H0Q3 95 aa12.97□□□□□ -0.33
SHH-205ENST00000472308 RFNGQ9Y644 331 aa12.97□□□□□ -0.33
SHH-205ENST00000472308 IGHV3OR16-12A0A075B7B8 117 aa12.96□□□□□ -0.33
SHH-205ENST00000472308 TEX48A0A1B0GUV7 120 aa12.96□□□□□ -0.33
SHH-205ENST00000472308 MEIS3P1A6NDR6 274 aa12.96□□□□□ -0.33
SHH-205ENST00000472308 IGKV1-17P01599 117 aa12.96□□□□□ -0.33
SHH-205ENST00000472308 HSPE1P61604 102 aaKnown RBP12.96□□□□□ -0.33
SHH-205ENST00000472308 OXA1LQ15070 435 aa12.96□□□□□ -0.33
SHH-205ENST00000472308 SFXN4Q6P4A7 337 aa12.96□□□□□ -0.33
SHH-205ENST00000472308 DHRS11Q6UWP2 260 aa12.96□□□□□ -0.33
SHH-205ENST00000472308 OR5H6Q8NGV6 325 aa12.96□□□□□ -0.33
SHH-205ENST00000472308 OR4A16Q8NH70 328 aa12.96□□□□□ -0.33
SHH-205ENST00000472308 ZNF2Q9BSG1 426 aaPredicted RBP12.96□□□□□ -0.33
SHH-205ENST00000472308 FNDC4Q9H6D8 234 aaPredicted RBP12.96□□□□□ -0.33
SHH-205ENST00000472308 AUNIPQ9H7T9 357 aa12.96□□□□□ -0.33
SHH-205ENST00000472308 EHFQ9NZC4 300 aa12.96□□□□□ -0.33
SHH-205ENST00000472308 TMED3Q9Y3Q3 217 aa12.96□□□□□ -0.33
SHH-205ENST00000472308 CLN5O75503 358 aa12.95□□□□□ -0.34
SHH-205ENST00000472308 HLA-DRB4P13762 266 aa12.95□□□□□ -0.34
SHH-205ENST00000472308 RFX2P48378 723 aa12.95□□□□□ -0.34
SHH-205ENST00000472308 KRTAP10-2P60368 255 aa12.95□□□□□ -0.34
SHH-205ENST00000472308 ERHP84090 104 aaKnown RBP12.95□□□□□ -0.34
SHH-205ENST00000472308 GDF5OSQ5U4N7 250 aa12.95□□□□□ -0.34
SHH-205ENST00000472308 C16orf54Q6UWD8 224 aa12.95□□□□□ -0.34
SHH-205ENST00000472308 RRP15Q9Y3B9 282 aaKnown RBP12.95□□□□□ -0.34
SHH-205ENST00000472308 HLA-DRB4X5D2U9 266 aa12.95□□□□□ -0.34
SHH-205ENST00000472308 FXYD7P58549 80 aa12.94□□□□□ -0.34
SHH-205ENST00000472308 DEFB1P60022 68 aa12.94□□□□□ -0.34
SHH-205ENST00000472308 MLANAQ16655 118 aa12.94□□□□□ -0.34
SHH-205ENST00000472308 H2BFWTQ7Z2G1 175 aa12.94□□□□□ -0.34
SHH-205ENST00000472308 CMTM1Q8IZ96 169 aa12.94□□□□□ -0.34
SHH-205ENST00000472308 NARS2Q96I59 477 aaKnown RBP12.94□□□□□ -0.34
SHH-205ENST00000472308 EPM2AB3EWF7 344 aa12.93□□□□□ -0.34
SHH-205ENST00000472308 GPR31O00270 319 aa12.93□□□□□ -0.34
SHH-205ENST00000472308 EIF2B2P49770 351 aaKnown RBP12.93□□□□□ -0.34
SHH-205ENST00000472308 SNRPD3P62318 126 aaKnown RBP12.93□□□□□ -0.34
SHH-205ENST00000472308 IZUMO4Q1ZYL8 232 aa12.93□□□□□ -0.34
SHH-205ENST00000472308 TIGITQ495A1 244 aa12.93□□□□□ -0.34
SHH-205ENST00000472308 ZNF709Q8N972 641 aa12.93□□□□□ -0.34
SHH-205ENST00000472308 C15orf53Q8NAA6 179 aa12.93□□□□□ -0.34
SHH-205ENST00000472308 OR4X1Q8NH49 305 aa12.93□□□□□ -0.34
SHH-205ENST00000472308 TMEM230Q96A57 120 aa12.93□□□□□ -0.34
SHH-205ENST00000472308 MRGPRFQ96AM1 343 aa12.93□□□□□ -0.34
SHH-205ENST00000472308 ATG101Q9BSB4 218 aa12.93□□□□□ -0.34
SHH-205ENST00000472308 TXNL4BQ9NX01 149 aaKnown RBP12.93□□□□□ -0.34
SHH-205ENST00000472308 YTHDF2Q9Y5A9 579 aaKnown RBP12.93□□□□□ -0.34
SHH-205ENST00000472308 INS-IGF2F8WCM5 200 aa12.92□□□□□ -0.34
SHH-205ENST00000472308 IGKV3-20P01619 116 aa12.92□□□□□ -0.34
SHH-205ENST00000472308 RNASE2P10153 161 aaKnown RBP12.92□□□□□ -0.34
SHH-205ENST00000472308 CBX5P45973 191 aa12.92□□□□□ -0.34
SHH-205ENST00000472308 PHLDA2Q53GA4 152 aa12.92□□□□□ -0.34
SHH-205ENST00000472308 VCXQ9H320 206 aa12.92□□□□□ -0.34
SHH-205ENST00000472308 SEPSECSQ9HD40 501 aaKnown RBP12.92□□□□□ -0.34
SHH-205ENST00000472308 FAM212BQ9NTI7 297 aaPredicted RBP12.92□□□□□ -0.34
SHH-205ENST00000472308 UBR4Q5T4S7 5183 aa12.91□□□□□ -0.34
SHH-205ENST00000472308 A0A0A6YYH2 397 aa12.91□□□□□ -0.34
SHH-205ENST00000472308 A6NJ64 397 aa12.91□□□□□ -0.34
SHH-205ENST00000472308 INAFM2P0DMQ5 153 aa12.91□□□□□ -0.34
SHH-205ENST00000472308 SNCAP37840 140 aa12.91□□□□□ -0.34
SHH-205ENST00000472308 AP2S1P53680 142 aaPredicted RBP12.91□□□□□ -0.34
SHH-205ENST00000472308 AQP4P55087 323 aa12.91□□□□□ -0.34
SHH-205ENST00000472308 NRN1Q9NPD7 142 aa12.91□□□□□ -0.34
SHH-205ENST00000472308 ANAPC10Q9UM13 185 aa12.91□□□□□ -0.34
SHH-205ENST00000472308 LOC102723971A0A1B0GUV8 181 aa12.9□□□□□ -0.34
SHH-205ENST00000472308 PMP2P02689 132 aa12.9□□□□□ -0.34
SHH-205ENST00000472308 HNRNPCP07910 306 aaKnown RBP eCLIP12.9□□□□□ -0.34
SHH-205ENST00000472308 NKX2-1P43699 371 aaPredicted RBP12.9□□□□□ -0.34
SHH-205ENST00000472308 TBC1D26Q86UD7 250 aa12.9□□□□□ -0.34
SHH-205ENST00000472308 C1orf158Q8N1D5 194 aa12.9□□□□□ -0.34
SHH-205ENST00000472308 CORTO00230 105 aa12.89□□□□□ -0.35
SHH-205ENST00000472308 CLEC2LP0C7M8 214 aa12.89□□□□□ -0.35
SHH-205ENST00000472308 OPRK1P41145 380 aa12.89□□□□□ -0.35
SHH-205ENST00000472308 SCAND1P57086 179 aa12.89□□□□□ -0.35
SHH-205ENST00000472308 DAD1P61803 113 aa12.89□□□□□ -0.35
SHH-205ENST00000472308 USF2Q15853 346 aaPredicted RBP12.89□□□□□ -0.35
SHH-205ENST00000472308 KRTAP1-5Q9BYS1 174 aa12.89□□□□□ -0.35
SHH-205ENST00000472308 SLC35B3Q9H1N7 401 aa12.89□□□□□ -0.35
SHH-205ENST00000472308 IFT46Q9NQC8 304 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms