RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 BRD3OSQ6XYD6 125 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 TMEM219Q86XT9 240 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 SCRT1Q9BWW7 348 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 CGB1A6NKQ9 187 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 ZNF705FA8MVS1 300 aaPredicted RBP11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 CXorf1O96002 111 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 ZNF705DP0CH99 300 aaPredicted RBP11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 ZNF705BP0CI00 300 aaPredicted RBP11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 HTR1DP28221 377 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 OCC1Q8TAD7 63 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 PERPQ96FX8 193 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 HELTA6NFD8 242 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 NTF3P20783 257 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 GATA4P43694 442 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 DMRTC2Q8IXT2 367 aaPredicted RBP11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 OR8I2Q8N0Y5 310 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 DIRC2Q96SL1 478 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 IGKV1OR2-108A0A075B7D4 117 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 A0A1W2PPI3 338 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 NPPCP23582 126 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 UCNP55089 124 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 PFDN5Q99471 154 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 TRAPPC1Q9Y5R8 145 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 HECTD1Q9ULT8 2610 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 PMS2P5A8MQ11 134 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 UBE2G1P62253 170 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 IGFL4Q6B9Z1 124 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 KCNIP4Q6PIL6 250 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 LINC00305Q7Z4B0 112 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 LINC00518Q8N0U6 118 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 MBD3L1Q8WWY6 194 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 P2RX4Q99571 388 aa11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 ANKRD17O75179 2603 aaKnown RBP11.11□□□□□ -0.63
CCDC88A-211ENST00000471947 COL27A1Q8IZC6 1860 aaPredicted RBP11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 FN1P02751 2386 aaKnown RBP11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 IGSF10Q6WRI0 2623 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 IGF2-ASQ6U949 168 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 FAM169BQ8N8A8 192 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 OR10G8Q8NGN5 311 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 TMEM186Q96B77 213 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 FNDC4Q9H6D8 234 aaPredicted RBP11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 FOXA2Q9Y261 457 aaPredicted RBP11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 PGPA6NDG6 321 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 CFHR2P36980 270 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 ZNF137PP52743 207 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 RPL11P62913 178 aaKnown RBP11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 PRCDQ00LT1 54 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 BAGE3Q86Y29 109 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 BAGE2Q86Y30 109 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 VSTM2AQ8TAG5 236 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 TOLLIPQ9H0E2 274 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 FKBP11Q9NYL4 201 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 TECRQ9NZ01 308 aaKnown RBP11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 CELSR1Q9NYQ6 3014 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 OR2J3O76001 311 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 SCGB1D1O95968 90 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 LIPFP07098 398 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 USF1P22415 310 aaPredicted RBP11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 PAXXQ9BUH6 204 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 BPESC1Q9GZL8 116 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 MANBALQ9NQG1 85 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 SLC45A2Q9UMX9 530 aa11.1□□□□□ -0.63
CCDC88A-211ENST00000471947 CLN5O75503 358 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 TAS2R45P59539 299 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 PMS2P11Q13670 270 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 CENPWQ5EE01 88 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 TCTEX1D1Q8N7M0 179 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 TMEM68Q96MH6 324 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 GAR1Q9NY12 217 aaKnown RBP11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 MIOXQ9UGB7 285 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 TRAV8-1A0A0A6YYK1 113 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 A0A1W2PN81 502 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 HIST1H2BKO60814 126 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 HIST1H2BJP06899 126 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 RNASE2P10153 161 aaKnown RBP11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 HIST1H2BOP23527 126 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 HIST1H2BBP33778 126 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 HIST1H2BDP58876 126 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 HIST1H2BCP62807 126 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 HIST2H2BEQ16778 126 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 CDPF1Q6NVV7 123 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 LYPD6BQ8NI32 183 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 SRSF12Q8WXF0 261 aaKnown RBP11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 HIST1H2BHQ93079 126 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 HIST1H2BNQ99877 126 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 HIST1H2BMQ99879 126 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 SAMD10Q9BYL1 202 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 FLNBO75369 2602 aaKnown RBP11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 TRAV20A0A0B4J274 112 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 IGHV1-3A0A0C4DH29 117 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 USF2Q15853 346 aaPredicted RBP11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 HLA-DRB5Q30154 266 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 OSR1Q8TAX0 266 aaPredicted RBP11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 CMTM2Q8TAZ6 248 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 WNT10AQ9GZT5 417 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 DNAJC4Q9NNZ3 241 aa11.09□□□□□ -0.63
CCDC88A-211ENST00000471947 FRMD6-AS1P0C7T7 363 aa11.08□□□□□ -0.64
CCDC88A-211ENST00000471947 PPP1R27Q86WC6 154 aa11.08□□□□□ -0.64
CCDC88A-211ENST00000471947 TMEM14BQ9NUH8 114 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms