RNA–Protein interactions for RNA: ENST00000469670.1

TTC28-205, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-205ENST00000469670 NEU1Q99519 415 aa12.98□□□□□ -0.33
TTC28-205ENST00000469670 ZNF2Q9BSG1 426 aaPredicted RBP12.98□□□□□ -0.33
TTC28-205ENST00000469670 SCRT2Q9NQ03 307 aa12.98□□□□□ -0.33
TTC28-205ENST00000469670 HSPE1P61604 102 aaKnown RBP12.97□□□□□ -0.33
TTC28-205ENST00000469670 ZNF705AQ6ZN79 300 aaPredicted RBP12.97□□□□□ -0.33
TTC28-205ENST00000469670 OR5H6Q8NGV6 325 aa12.97□□□□□ -0.33
TTC28-205ENST00000469670 TXNL4BQ9NX01 149 aaKnown RBP12.97□□□□□ -0.33
TTC28-205ENST00000469670 A0A0A6YYH2 397 aa12.96□□□□□ -0.33
TTC28-205ENST00000469670 A6NJ64 397 aa12.96□□□□□ -0.33
TTC28-205ENST00000469670 GPR31O00270 319 aa12.96□□□□□ -0.33
TTC28-205ENST00000469670 RFX2P48378 723 aa12.96□□□□□ -0.33
TTC28-205ENST00000469670 EIF2B2P49770 351 aaKnown RBP12.96□□□□□ -0.33
TTC28-205ENST00000469670 AQP4P55087 323 aa12.96□□□□□ -0.33
TTC28-205ENST00000469670 H2BFWTQ7Z2G1 175 aa12.96□□□□□ -0.33
TTC28-205ENST00000469670 TMEM230Q96A57 120 aa12.96□□□□□ -0.33
TTC28-205ENST00000469670 SEC22AQ96IW7 307 aa12.96□□□□□ -0.33
TTC28-205ENST00000469670 RNF167Q9H6Y7 350 aa12.96□□□□□ -0.33
TTC28-205ENST00000469670 DNAH5Q8TE73 4624 aa12.96□□□□□ -0.34
TTC28-205ENST00000469670 SMIM9A6NGZ8 99 aa12.95□□□□□ -0.34
TTC28-205ENST00000469670 ZNF705FA8MVS1 300 aaPredicted RBP12.95□□□□□ -0.34
TTC28-205ENST00000469670 H3BMM0 161 aa12.95□□□□□ -0.34
TTC28-205ENST00000469670 ZNF705DP0CH99 300 aaPredicted RBP12.95□□□□□ -0.34
TTC28-205ENST00000469670 ZNF705BP0CI00 300 aaPredicted RBP12.95□□□□□ -0.34
TTC28-205ENST00000469670 HTN3P15516 51 aa12.95□□□□□ -0.34
TTC28-205ENST00000469670 SNCAP37840 140 aa12.95□□□□□ -0.34
TTC28-205ENST00000469670 SPINK9Q5DT21 86 aa12.95□□□□□ -0.34
TTC28-205ENST00000469670 NIPSNAP3BQ9BS92 247 aa12.95□□□□□ -0.34
TTC28-205ENST00000469670 FXYD6Q9H0Q3 95 aa12.95□□□□□ -0.34
TTC28-205ENST00000469670 IFT46Q9NQC8 304 aa12.95□□□□□ -0.34
TTC28-205ENST00000469670 DKK2Q9UBU2 259 aa12.95□□□□□ -0.34
TTC28-205ENST00000469670 TEX48A0A1B0GUV7 120 aa12.94□□□□□ -0.34
TTC28-205ENST00000469670 EBAG9O00559 213 aa12.94□□□□□ -0.34
TTC28-205ENST00000469670 CLN5O75503 358 aa12.94□□□□□ -0.34
TTC28-205ENST00000469670 IGKV1-39P01597 117 aa12.94□□□□□ -0.34
TTC28-205ENST00000469670 IGKV1D-39P04432 117 aa12.94□□□□□ -0.34
TTC28-205ENST00000469670 SCAND1P57086 179 aa12.94□□□□□ -0.34
TTC28-205ENST00000469670 FAM3BP58499 235 aaPredicted RBP12.94□□□□□ -0.34
TTC28-205ENST00000469670 PHLDA2Q53GA4 152 aa12.94□□□□□ -0.34
TTC28-205ENST00000469670 FAM222AQ5U5X8 452 aa12.94□□□□□ -0.34
TTC28-205ENST00000469670 DIABLOQ9NR28 239 aa12.94□□□□□ -0.34
TTC28-205ENST00000469670 FAM212BQ9NTI7 297 aaPredicted RBP12.94□□□□□ -0.34
TTC28-205ENST00000469670 MRPL36Q9P0J6 103 aaKnown RBP12.94□□□□□ -0.34
TTC28-205ENST00000469670 TMED3Q9Y3Q3 217 aa12.94□□□□□ -0.34
TTC28-205ENST00000469670 RFNGQ9Y644 331 aa12.94□□□□□ -0.34
TTC28-205ENST00000469670 IGHV3OR16-12A0A075B7B8 117 aa12.93□□□□□ -0.34
TTC28-205ENST00000469670 PMP2P02689 132 aa12.93□□□□□ -0.34
TTC28-205ENST00000469670 AP2S1P53680 142 aaPredicted RBP12.93□□□□□ -0.34
TTC28-205ENST00000469670 SNRPD3P62318 126 aaKnown RBP12.93□□□□□ -0.34
TTC28-205ENST00000469670 TMEM88Q6PEY1 159 aa12.93□□□□□ -0.34
TTC28-205ENST00000469670 U3KQE9 123 aa12.93□□□□□ -0.34
TTC28-205ENST00000469670 FAM90A26D6RGX4 464 aa12.92□□□□□ -0.34
TTC28-205ENST00000469670 CORTO00230 105 aa12.92□□□□□ -0.34
TTC28-205ENST00000469670 SCGB2A1O75556 95 aa12.92□□□□□ -0.34
TTC28-205ENST00000469670 C16orf54Q6UWD8 224 aa12.92□□□□□ -0.34
TTC28-205ENST00000469670 C6orf223Q8N319 242 aa12.92□□□□□ -0.34
TTC28-205ENST00000469670 OR4X1Q8NH49 305 aa12.92□□□□□ -0.34
TTC28-205ENST00000469670 GLMPQ8WWB7 406 aa12.92□□□□□ -0.34
TTC28-205ENST00000469670 MRGPRFQ96AM1 343 aa12.92□□□□□ -0.34
TTC28-205ENST00000469670 CLEC2LP0C7M8 214 aa12.91□□□□□ -0.34
TTC28-205ENST00000469670 HLA-DRB4P13762 266 aa12.91□□□□□ -0.34
TTC28-205ENST00000469670 SDC2P34741 201 aa12.91□□□□□ -0.34
TTC28-205ENST00000469670 MXD1Q05195 221 aa12.91□□□□□ -0.34
TTC28-205ENST00000469670 OXA1LQ15070 435 aa12.91□□□□□ -0.34
TTC28-205ENST00000469670 MLANAQ16655 118 aa12.91□□□□□ -0.34
TTC28-205ENST00000469670 TIGITQ495A1 244 aa12.91□□□□□ -0.34
TTC28-205ENST00000469670 IDNKQ5T6J7 187 aa12.91□□□□□ -0.34
TTC28-205ENST00000469670 TBC1D26Q86UD7 250 aa12.91□□□□□ -0.34
TTC28-205ENST00000469670 OR5H2Q8NGV7 314 aa12.91□□□□□ -0.34
TTC28-205ENST00000469670 OR6F1Q8NGZ6 308 aa12.91□□□□□ -0.34
TTC28-205ENST00000469670 YTHDF1Q9BYJ9 559 aaKnown RBP12.91□□□□□ -0.34
TTC28-205ENST00000469670 FNDC4Q9H6D8 234 aaPredicted RBP12.91□□□□□ -0.34
TTC28-205ENST00000469670 SEPSECSQ9HD40 501 aaKnown RBP12.91□□□□□ -0.34
TTC28-205ENST00000469670 HLA-DRB4X5D2U9 266 aa12.91□□□□□ -0.34
TTC28-205ENST00000469670 NACAE9PAV3 2078 aa12.9□□□□□ -0.34
TTC28-205ENST00000469670 NBDYA0A0U1RRE5 68 aa12.9□□□□□ -0.34
TTC28-205ENST00000469670 INS-IGF2F8WCM5 200 aa12.9□□□□□ -0.34
TTC28-205ENST00000469670 IGKV1-17P01599 117 aa12.9□□□□□ -0.34
TTC28-205ENST00000469670 HNRNPCP07910 306 aaKnown RBP eCLIP12.9□□□□□ -0.34
TTC28-205ENST00000469670 RNASE2P10153 161 aaKnown RBP12.9□□□□□ -0.34
TTC28-205ENST00000469670 S100GP29377 79 aa12.9□□□□□ -0.34
TTC28-205ENST00000469670 OPRK1P41145 380 aa12.9□□□□□ -0.34
TTC28-205ENST00000469670 SUB1P53999 127 aaKnown RBP eCLIP12.9□□□□□ -0.34
TTC28-205ENST00000469670 FXYD7P58549 80 aa12.9□□□□□ -0.34
TTC28-205ENST00000469670 IZUMO4Q1ZYL8 232 aa12.9□□□□□ -0.34
TTC28-205ENST00000469670 SLC35G3Q8N808 338 aa12.9□□□□□ -0.34
TTC28-205ENST00000469670 ATG101Q9BSB4 218 aa12.9□□□□□ -0.34
TTC28-205ENST00000469670 BLOC1S6Q9UL45 172 aa12.9□□□□□ -0.34
TTC28-205ENST00000469670 ANAPC10Q9UM13 185 aa12.9□□□□□ -0.34
TTC28-205ENST00000469670 SSR3Q9UNL2 185 aa12.9□□□□□ -0.34
TTC28-205ENST00000469670 TAS2R46P59540 309 aa12.89□□□□□ -0.35
TTC28-205ENST00000469670 C15orf53Q8NAA6 179 aa12.89□□□□□ -0.35
TTC28-205ENST00000469670 NRN1Q9NPD7 142 aa12.89□□□□□ -0.35
TTC28-205ENST00000469670 TRAV30A0A087WSZ9 112 aa12.88□□□□□ -0.35
TTC28-205ENST00000469670 IGKV3-20P01619 116 aa12.88□□□□□ -0.35
TTC28-205ENST00000469670 LPCAT3Q6P1A2 487 aa12.88□□□□□ -0.35
TTC28-205ENST00000469670 SPATA12Q7Z6I5 190 aa12.88□□□□□ -0.35
TTC28-205ENST00000469670 NAT1P18440 290 aa12.87□□□□□ -0.35
TTC28-205ENST00000469670 PSMB9P28065 219 aa12.87□□□□□ -0.35
TTC28-205ENST00000469670 NKX2-1P43699 371 aaPredicted RBP12.87□□□□□ -0.35
TTC28-205ENST00000469670 RPL5P46777 297 aaKnown RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms