RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 HERC2O95714 4834 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 GPR31O00270 319 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 NDUFA4O00483 81 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 TSPAN4O14817 238 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 SNAPC5O75971 98 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 TNFRSF6BO95407 300 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 KRASP01116 189 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 PMP2P02689 132 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 RPA2P15927 270 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 PRSS3P35030 304 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 TGFBR1P36897 503 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 LPAR6P43657 344 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 LAMTOR1Q6IAA8 161 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 LPCAT3Q6P1A2 487 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 SLC38A6Q8IZM9 456 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 SAMD12Q8N8I0 201 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 TSPAN14Q8NG11 270 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 OR5B3Q8NH48 314 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 FCAMRQ8WWV6 532 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 TMEM56Q96MV1 263 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 CMTM3Q96MX0 182 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 TSC22D3Q99576 134 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 SPAG8Q99932 426 aaPredicted RBP5.38□□□□□ -1.55
USP54-208ENST00000461520 OVOL2Q9BRP0 275 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 SEPSECSQ9HD40 501 aaKnown RBP5.38□□□□□ -1.55
USP54-208ENST00000461520 VCX3AQ9NNX9 186 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 DAZ1Q9NQZ3 744 aaKnown RBP5.38□□□□□ -1.55
USP54-208ENST00000461520 FAM212BQ9NTI7 297 aaPredicted RBP5.38□□□□□ -1.55
USP54-208ENST00000461520 C21orf62Q9NYP8 219 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 PRNDQ9UKY0 176 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 OR51B2Q9Y5P1 312 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 SELENOKQ9Y6D0 94 aa5.38□□□□□ -1.55
USP54-208ENST00000461520 FRAS1Q86XX4 4008 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 A0A087WXM4 84 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 IGHV3-35A0A0C4DH35 117 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 SMIM31A0A1B0GVY4 71 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 OR2T8A6NH00 312 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 K7EMT4 169 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 S100GP29377 79 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 HRH1P35367 487 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 G6PCP35575 357 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 MFAP2P55001 183 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 APOC4P55056 127 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 TSPAN5P62079 268 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 IZUMO4Q1ZYL8 232 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 OR1P1Q8NH06 330 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 GPX8Q8TED1 209 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 SLC25A46Q96AG3 418 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 YIPF6Q96EC8 236 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 HINT2Q9BX68 163 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 FXYD6Q9H0Q3 95 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 TMEM14BQ9NUH8 114 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 TP53TG1Q9Y2A0 90 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 NSG2Q9Y328 171 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 PCLOQ9Y6V0 5065 aa5.37□□□□□ -1.55
USP54-208ENST00000461520 IGHV3-21A0A0B4J1V1 117 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 KIR2DL5BA0A0G2JN68 375 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 KIR2DL5BA0A0G2JPC4 375 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 C15orf61A6NNL5 157 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 C15orf62A8K5M9 175 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 K7EIM0 57 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 UBE2CO00762 179 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 TNFAIP8O95379 198 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 APOA1P02647 267 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 HLA-DMAP28067 261 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 FCGR2BP31994 310 aaPredicted RBP5.36□□□□□ -1.55
USP54-208ENST00000461520 BMI1P35226 326 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 LSM3P62310 102 aaKnown RBP5.36□□□□□ -1.55
USP54-208ENST00000461520 RPL36AP83881 106 aaKnown RBP5.36□□□□□ -1.55
USP54-208ENST00000461520 RELQ04864 619 aaPredicted RBP5.36□□□□□ -1.55
USP54-208ENST00000461520 Q56UQ5 140 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 KIR2DL5AQ8N109 375 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 UBAC2Q8NBM4 344 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 KIR2DL5BQ8NHK3 375 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 CHRDL1Q9BU40 450 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 C20orf24Q9BUV8 137 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 SCPEP1Q9HB40 452 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 MDFICQ9P1T7 246 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 COMMD3Q9UBI1 195 aa5.36□□□□□ -1.55
USP54-208ENST00000461520 OR4C46A6NHA9 309 aa5.35□□□□□ -1.55
USP54-208ENST00000461520 NUPL2O15504 423 aaKnown RBP5.35□□□□□ -1.55
USP54-208ENST00000461520 EIF4EP06730 217 aaKnown RBP5.35□□□□□ -1.55
USP54-208ENST00000461520 PRSS2P07478 247 aa5.35□□□□□ -1.55
USP54-208ENST00000461520 CTSGP08311 255 aa5.35□□□□□ -1.55
USP54-208ENST00000461520 RCVRNP35243 200 aa5.35□□□□□ -1.55
USP54-208ENST00000461520 MFAP4P55083 255 aa5.35□□□□□ -1.55
USP54-208ENST00000461520 CMC4P56277 68 aaPredicted RBP5.35□□□□□ -1.55
USP54-208ENST00000461520 PRCDQ00LT1 54 aa5.35□□□□□ -1.55
USP54-208ENST00000461520 TNFRSF9Q07011 255 aa5.35□□□□□ -1.55
USP54-208ENST00000461520 PHLDA2Q53GA4 152 aa5.35□□□□□ -1.55
USP54-208ENST00000461520 H2BFWTQ7Z2G1 175 aa5.35□□□□□ -1.55
USP54-208ENST00000461520 TBC1D26Q86UD7 250 aa5.35□□□□□ -1.55
USP54-208ENST00000461520 ZNF114Q8NC26 417 aa5.35□□□□□ -1.55
USP54-208ENST00000461520 OR4A16Q8NH70 328 aa5.35□□□□□ -1.55
USP54-208ENST00000461520 GALNT14Q96FL9 552 aa5.35□□□□□ -1.55
USP54-208ENST00000461520 SEC22AQ96IW7 307 aa5.35□□□□□ -1.55
USP54-208ENST00000461520 OR10C1Q96KK4 312 aa5.35□□□□□ -1.55
USP54-208ENST00000461520 TXN2Q99757 166 aa5.35□□□□□ -1.55
USP54-208ENST00000461520 UBQLN2Q9UHD9 624 aa5.35□□□□□ -1.55
USP54-208ENST00000461520 SMPXQ9UHP9 88 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms